Browse Element(s) Details


OsAffx.30540.1.S1_at

Description tigr:9638.m02237
TID=OsAffx.30540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2626010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified
LOC_Os10g26220NANA10+13251184..13254022hypothetical protein
LOC_Os10g26230NANA10+13256386..13257693hypothetical protein
LOC_Os10g26240NANA10+13260623..13261245No apical meristem protein
LOC_Os10g26250Os.46681.1.S1_at10/1110+13262038..13262852hypothetical protein
LOC_Os10g26250OsAffx.20377.1.S1_x_at3/1110+13262038..13262852hypothetical protein
LOC_Os10g26250Os.17912.2.S1_x_at1/1110+13262038..13262852hypothetical protein
LOC_Os10g26260OsAffx.30540.1.S1_at10/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.17912.1.A1_at3/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.40386.1.S1_at1/1110+13263143..13265849hypothetical protein
LOC_Os10g26270OsAffx.18408.1.S1_at11/1110+13266555..13268534No apical meristem protein
LOC_Os10g26270OsAffx.20377.1.S1_x_at2/1110+13266555..13268534No apical meristem protein
LOC_Os10g26280Os.46783.1.S1_a_at11/1110+13269695..13275002origin recognition complex subunit 3, putative
LOC_Os10g26290Os.46680.1.S1_x_at11/1110+13280395..13282773Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30540.1.S1_at--913--7951NONE
GGATCATTCCCAGGTGAACACGTCA
NONE
OsAffx.30540.1.S1_at--118--5451Chr10:13263805..13263829 (25 bp)
GAACACGTCACTTGTAGTTAGCGTT
LOC_Os10g26260
OsAffx.30540.1.S1_at--104--4631Chr10:13263675..13263809 (25 bp)
GCGTTATAACTAAGGCAACGGACAT
LOC_Os10g26260
OsAffx.30540.1.S1_at--244--5631Chr10:13263611..13263635 (25 bp)
GACACAGGTGATGGCGTGTATGTCA
LOC_Os10g26260
OsAffx.30540.1.S1_at--386--871Chr10:13263601..13263625 (25 bp)
ATGGCGTGTATGTCACTACGGTGGA
LOC_Os10g26260
OsAffx.30540.1.S1_at--140--3331Chr10:13263588..13263612 (25 bp)
CACTACGGTGGATGCAGACGAAGGT
LOC_Os10g26260
OsAffx.30540.1.S1_at--370--5611Chr10:13263387..13263411 (25 bp)
GACAAGGACGTCGACCACAGGCGAG
LOC_Os10g26260
OsAffx.30540.1.S1_at--858--1891Chr10:13263380..13263404 (25 bp)
ACGTCGACCACAGGCGAGGATGGCC
LOC_Os10g26260
OsAffx.30540.1.S1_at--650--791Chr10:13263287..13263311 (25 bp)
ATGTGGGATGAATGTACCCTGCCGT
LOC_Os10g26260
OsAffx.30540.1.S1_at--763--8991Chr10:13263279..13263303 (25 bp)
TGAATGTACCCTGCCGTGCGGAGGA
LOC_Os10g26260
OsAffx.30540.1.S1_at--93--3991Chr10:13263245..13263269 (25 bp)
CGGGACGAATGCAAGCAATGGTTGT
LOC_Os10g26260
Target Sequence 
GGATCATTCCCAGGTGAACACGTCACTTGTAGTTAGCGTTATAACTAAGGCAACGGACATGGGCGGACACGGACAATGGC
GAGGGCGGCGGCTGCGGCGGACACAGGTGATGGCGTGTATGTCACTACGGTGGATGCAGACGAAGGTGGCGGCCGCTGTG
GACAAGGGCAAGGGCGACGACGACGGCTGCGGTGGACGAGGACGACGAACACGGGTGTGGACGGTGGGACGGACGTGGGC
CTCCGCCGCGGAGGACGAGGACAGTGGGATGGAAGCGAGCAACGGCAACGGATACGAGCGAGGATGGCAGGACGGATGTG
AGGGACAAGGACGTCGACCACAGGCGAGGATGGCCGGACGGCCGCGGACGACAACGGCGGTCGTAGTGGATGAGGACAAC
GACCGTGGCGGACACGGGTGTGGATGTGGGATGAATGTACCCTGCCGTGCGGAGGATGAGGACGGCGGGACGAATGCAAG
CAATGGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis