Browse Element(s) Details


OsAffx.30543.2.S1_at

Description tigr:9637.m02079
TID=OsAffx.30543.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Agenet domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2429011/11Agenet domain containing protein
LOC_Os09g243109/11heavy metal-associated domain containing protein, expressed
LOC_Os10g264308/11Agenet domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24270NANA9+14418039..14420842retrotransposon protein, putative, unclassified
LOC_Os09g24280OsAffx.29996.1.S1_at10/119+14423811..14425809hypothetical protein
LOC_Os09g24290OsAffx.30543.2.S1_x_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24290OsAffx.30543.2.S1_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24300NANA9+14440360..14440806hypothetical protein
LOC_Os09g24310OsAffx.30543.2.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.3.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.2.S1_x_at3/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24320Os.27516.1.A1_at11/119+14453727..144564542-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os09g24330NANA9+14462612..14463476protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30543.2.S1_at--522--7611Chr09:14438744..14438768 (25 bp)
GGGAATTGTGCTGAAGGTGAACGAT
LOC_Os09g24290
OsAffx.30543.2.S1_at--446--1872Chr09:14438764..14438788 (25 bp)
ACGATGCAAGGAGGCTGCTAGCTTA
LOC_Os09g24290
OsAffx.30543.2.S1_at--324--6333Chr10:13429960..13429984 (25 bp)
GATGCAAGGAGGCTGCTAGCTTACT
LOC_Os10g26430
OsAffx.30543.2.S1_at--921--653Chr10:13429961..13429985 (25 bp)
ATGCAAGGAGGCTGCTAGCTTACTT
LOC_Os10g26430
OsAffx.30543.2.S1_at--955--5173Chr10:13429963..13429987 (25 bp)
GCAAGGAGGCTGCTAGCTTACTTAC
LOC_Os10g26430
OsAffx.30543.2.S1_at--1023--2893Chr10:13429965..13429989 (25 bp)
AAGGAGGCTGCTAGCTTACTTACCA
LOC_Os10g26430
OsAffx.30543.2.S1_at--610--993Chr10:13429966..13429990 (25 bp)
AGGAGGCTGCTAGCTTACTTACCAG
LOC_Os10g26430
OsAffx.30543.2.S1_at--1000--7993Chr10:13429967..13429991 (25 bp)
GGAGGCTGCTAGCTTACTTACCAGG
LOC_Os10g26430
OsAffx.30543.2.S1_at--544--6213Chr10:13429968..13429991 (24 bp)
GAGGCTGCTAGCTTACTTACCAGGG
LOC_Os10g26430
OsAffx.30543.2.S1_at--208--9093Chr10:13429973..13430119 (25 bp)
TGCTAGCTTACTTACCAGGGGAGAA
LOC_Os10g26430
OsAffx.30543.2.S1_at--120--2111Chr09:14439330..14439354 (25 bp)
ACAGTCTAAAATGGACCGAGCGTAA
LOC_Os09g24290
Target Sequence 
GGGAATTGTGCTGAAGGTGAACGATGCAAGGAGGCTGCTAGCTTACTTACCAGGGGAGAAGAAGATGGTGCTATTCCGCA
AGGATCAACTGAGGCATTCACTCGAGTGGATTGATAACGAGTGGAAGAATTTTGCTCACCGGGAAGATATCGCACGTCGA
ATCCCTAGTGCGGAAGATCTTAGAATAAGAGTCATTACTGCACGAGAAGTTCTTACAAGAGAAGAAGTAATGAAGCAATT
GGAAGGCCTGAAAACAAACAAAGGTGGTTCAAACTCTGCAAAACCAGCTGCAGAGAAGGGAAGTAGCAGCTCTGCTACTA
AGAAAACCACACCTGATCTCATTAGGCATGCAACAAATGATCTAGGATCTTTAAACTTCAAGCATGTCGGTGTTCCTGCC
TCTGAAGAAATTAGAACTGATAACAAGGGATCGCAAGTTAATCTTGAAAATGTCCTAAAGTCGGACAGTCTAAAATGGAC
CGAGCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30543.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis