Browse Element(s) Details


OsAffx.30562.1.S1_at

Description tigr:9638.m02353
TID=OsAffx.30562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2742011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30562.1.S1_at--922--4771Chr10:14131882..14131906 (25 bp)
GCTCCACCATCATGTGGCGGCGGAC
LOC_Os10g27420
OsAffx.30562.1.S1_at--452--5172Chr03:14226158..14226225 (25 bp)
GCAAGCAGACACGGCATTGGCGGCA
NONE
OsAffx.30562.1.S1_at--246--4111Chr10:14131672..14131696 (25 bp)
CGACAGCGACCAGCGGACGTGGCAT
LOC_Os10g27420
OsAffx.30562.1.S1_at--744--5631Chr10:14131589..14131613 (25 bp)
GACACGGCCTAGTCGGCTGCGGCGA
LOC_Os10g27420
OsAffx.30562.1.S1_at--662--9471Chr10:14131451..14131475 (25 bp)
TCTGTTGTTGGTTCTTCTCGGCTCT
LOC_Os10g27420
OsAffx.30562.1.S1_at--616--9571Chr10:14131439..14131463 (25 bp)
TCTTCTCGGCTCTTGGTTCTTCTAT
LOC_Os10g27420
OsAffx.30562.1.S1_at--912--10571Chr10:14131274..14131444 (25 bp)
TTCTATGTTCTTGGTGACACCATTA
LOC_Os10g27420
OsAffx.30562.1.S1_at--237--7772Chr03:14226518..14226542 (25 bp)
GGTGACACCATTACTCAGTGATGCA
NONE
OsAffx.30562.1.S1_at--1079--10472Chr03:14226528..14226552 (25 bp)
TTACTCAGTGATGCATCGACGGCGA
NONE
OsAffx.30562.1.S1_at--45--3472Chr03:14226533..14226557 (25 bp)
CAGTGATGCATCGACGGCGAACATC
NONE
OsAffx.30562.1.S1_at--726--4592Chr03:14226549..14226573 (25 bp)
GCGAACATCCGGTGGTGGGATGCCT
NONE
Target Sequence 
GCTCCACCATCATGTGGCGGCGGACGCCGCCTCGACGGCGGGGGCGGCGGCGGCGACAGGCGGACGCGGCCTCGTCTGCG
GGGGCGGTGGCGGCAAGCGGACACGGCATCGGCCGCGGCGACGAGCGGACGCGGCCTCATCGGTGGCGGCGGCAAGCAGA
CACGGCATTGGCGGCAGCGGCGGCTGCGACGACGGACGCGGCCTCGTCGGCGACAGCGACCAGCGGACGTGGCATCGGTG
GCGGCAGCGGCAACAGGCGGATGCGGCCTCCTCGGCGGCGGCAGCAACGAGCGGACACGGCCTAGTCGGCTGCGGCGACC
AGCGGACGCGGCATCGGCGGCGGCGGCGGCGACCAGCGGACGTGGCCTCGTCAGGGTTCTTGCTAGTTCATGCGTCGGGG
TTCTTGCTAGTTCTTGTAGTATCTCTTTTTCTCTGTTGTTGGTTCTTCTCGGCTCTTGGTTCTTCTATGTTCTTGGTGAC
ACCATTACTCAGTGATGCATCGACGGCGAACATCCGGTGGTGGGATGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis