Browse Element(s) Details


Os.46465.1.S1_a_at

Description gb:AK063266.1
DB_XREF= gi:32973284
TID=Os.46465.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0045B21.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B01, full insert sequence.
FL= gb:AK063266.1 gb:AK099068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2747011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein
LOC_Os10g27980Os.21193.1.S1_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27980Os.21193.2.S1_x_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27990Os.14555.1.S1_at10/1110+14171418..14174836exocyst complex component Sec15, putative, expressed
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46465.1.S1_a_at--51--8211Chr10:14160446..14160470 (25 bp)
GGAAGTGCTGCAACAGATGTTCAAA
LOC_Os10g27470
Os.46465.1.S1_a_at--935--3411Chr10:14160459..14160483 (25 bp)
CAGATGTTCAAATTGCAGAGCAGTT
LOC_Os10g27470
Os.46465.1.S1_a_at--996--4911Chr10:14161163..14161187 (25 bp)
GCTTCCCCTGATCACAGTTATGACT
LOC_Os10g27470
Os.46465.1.S1_a_at--669--6451Chr10:14161172..14161196 (25 bp)
GATCACAGTTATGACTTCATTCCAT
LOC_Os10g27470
Os.46465.1.S1_a_at--206--391Chr10:14161195..14161219 (25 bp)
ATCACATTTGCCAGCACCGAGATCT
LOC_Os10g27470
Os.46465.1.S1_a_at--427--10291Chr10:14161201..14161225 (25 bp)
TTTGCCAGCACCGAGATCTCCAGAG
LOC_Os10g27470
Os.46465.1.S1_a_at--705--6411Chr10:14161215..14161239 (25 bp)
GATCTCCAGAGCCAGATATTCCAAC
LOC_Os10g27470
Os.46465.1.S1_a_at--526--1251Chr10:14161228..14161252 (25 bp)
AGATATTCCAACTACTTCACTCACT
LOC_Os10g27470
Os.46465.1.S1_a_at--86--10511Chr10:14161243..14161267 (25 bp)
TTCACTCACTCGCAGAGCAAGCTGT
LOC_Os10g27470
Os.46465.1.S1_a_at--994--2671Chr10:14161261..14161285 (25 bp)
AAGCTGTTTTACAGAACCTCGCCTG
LOC_Os10g27470
Os.46465.1.S1_a_at--891--10331Chr10:14161268..14161292 (25 bp)
TTTACAGAACCTCGCCTGCAAGCGA
LOC_Os10g27470
Target Sequence 
GGAAGTGCTGCAACAGATGTTCAAATTGCAGAGCAGTTGATAAAGAACTTCATGGCTGAAGCTGCTGCCGCTTCCCCTGA
TCACAGTTATGACTTCATTCCATCACATTTGCCAGCACCGAGATCTCCAGAGCCAGATATTCCAACTACTTCACTCACTC
GCAGAGCAAGCTGTTTTACAGAACCTCGCCTGCAAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46465.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis