Browse Element(s) Details


Os.21193.1.S1_at

Description gb:AK119782.1
DB_XREF= gi:37989405
TID=Os.21193.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline transporter 1 (OSJNBa0032I20.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F03, full insert sequence.
FL= gb:AK119782.1 gb:AK064079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2798011/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein
LOC_Os10g27980Os.21193.1.S1_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27980Os.21193.2.S1_x_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27990Os.14555.1.S1_at10/1110+14171418..14174836exocyst complex component Sec15, putative, expressed
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015824biological_processL-proline transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015193molecular_functionL-proline transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21193.1.S1_at--124--10691Chr10:14171203..14171227 (25 bp)
TTCCATGACATGTGAATGCAGTTAG
LOC_Os10g27980
Os.21193.1.S1_at--658--3511Chr10:14171211..14171235 (25 bp)
CATGTGAATGCAGTTAGTTAGTATC
LOC_Os10g27980
Os.21193.1.S1_at--594--1211Chr10:14171222..14171246 (25 bp)
AGTTAGTTAGTATCATGTTGGTGAT
LOC_Os10g27980
Os.21193.1.S1_at--448--4331Chr10:14171263..14171287 (25 bp)
CCATCTGTGCCAGTGGTTTATACCT
LOC_Os10g27980
Os.21193.1.S1_at--1034--1091Chr10:14171274..14171298 (25 bp)
AGTGGTTTATACCTGGTGATCTGAC
LOC_Os10g27980
Os.21193.1.S1_at--68--10431Chr10:14171280..14171304 (25 bp)
TTATACCTGGTGATCTGACATGTGC
LOC_Os10g27980
Os.21193.1.S1_at--271--9971Chr10:14171283..14171307 (25 bp)
TACCTGGTGATCTGACATGTGCTAA
LOC_Os10g27980
Os.21193.1.S1_at--1030--7751Chr10:14171288..14171312 (25 bp)
GGTGATCTGACATGTGCTAAGTATT
LOC_Os10g27980
Os.21193.1.S1_at--742--3851Chr10:14171294..14171318 (25 bp)
CTGACATGTGCTAAGTATTAAGTAT
LOC_Os10g27980
Os.21193.1.S1_at--945--171Chr10:14171319..14171343 (25 bp)
ATTTATGATTTGGAATAGCGGCAAC
LOC_Os10g27980
Os.21193.1.S1_at--1135--9971Chr10:14171334..14171358 (25 bp)
TAGCGGCAACAGTTGAGGGAAAATC
LOC_Os10g27980
Target Sequence 
TTCCATGACATGTGAATGCAGTTAGTTAGTATCATGTTGGTGATGAAATGAATNTNTCTGNCCATCTGTGCCAGTGGTTT
ATACCTGGTGATCTGACATGTGCTAAGTATTAAGTATATTTATGATTTGGAATAGCGGCAACAGTTGAGGGAAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis