Browse Element(s) Details


Os.23344.1.S1_at

Description gb:AK100246.1
DB_XREF= gi:32985455
TID=Os.23344.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-binding protein (OSJNBa0045B21.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057O19, full insert sequence.
FL= gb:AK100246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2748011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein
LOC_Os10g27980Os.21193.1.S1_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27980Os.21193.2.S1_x_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27990Os.14555.1.S1_at10/1110+14171418..14174836exocyst complex component Sec15, putative, expressed
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23344.1.S1_at--1155--6311Chr10:14164253..14164277 (25 bp)
GATGAAGTCTCACTGTTGCATACGA
LOC_Os10g27480
Os.23344.1.S1_at--616--2371Chr10:14164324..14164348 (25 bp)
AAACTCCCTAAGGTGTAGCCCTGAT
LOC_Os10g27480
Os.23344.1.S1_at--208--911Chr10:14164365..14164389 (25 bp)
AGGCGATAGCCAGCCATTTACTAGA
LOC_Os10g27480
Os.23344.1.S1_at--196--8831Chr10:14164428..14164452 (25 bp)
TGATTTCACACCTTCTGGTCATGAG
LOC_Os10g27480
Os.23344.1.S1_at--476--5911Chr10:14164951..14164974 (24 bp)
GAGCTCTTCTCATGTAGTGCTACAG
LOC_Os10g27480
Os.23344.1.S1_at--107--5851Chr10:14164974..14164998 (25 bp)
GACCTTCATGGTGCTTCTTGTTAGA
LOC_Os10g27480
Os.23344.1.S1_at--650--2831Chr10:14165105..14165129 (25 bp)
AAGTTTTCATTGACCAGGCTGGCCC
LOC_Os10g27480
Os.23344.1.S1_at--530--6671Chr10:14165133..14165157 (25 bp)
GTTGCTGTAATTCTGTCACTGCTTC
LOC_Os10g27480
Os.23344.1.S1_at--402--931Chr10:14165180..14165204 (25 bp)
AGGCATCTCCTCTATATCGATGTGA
LOC_Os10g27480
Os.23344.1.S1_at--719--7051Chr10:14165237..14165261 (25 bp)
GTAACTGATGCTTGCGGTTCTTGCA
LOC_Os10g27480
Os.23344.1.S1_at--1010--3071Chr10:14165309..14165333 (25 bp)
AATCAATGTCTCCTTGCTTCAGAAA
LOC_Os10g27480
Target Sequence 
GATGAAGTCTCACTGTTGCATACGAGATTGCAGGCACTTGAAGCTGATCAGGAGTTTCTTAAGCATGTGTTAAACTCCCT
AAGGTGTAGCCCTGATGGACTGCAGTGTGTACAGGCGATAGCCAGCCATTTACTAGAGTTGAGAAGAATTGCAACTCAGA
GATAATTTTCCCCCCTGATTTCACACCTTCTGGTCATGAGCTCTTCTCATGTAGTGCTACAGACCTTCATGGTGCTTCTT
GTTAGAGCAGCATTGAAGAGGTCTAGAAATCGATGTCGGTGAAAGATCATCTGAAATGAGGAAAAGGAGCATGCACTGAC
AAAAAAAACTTCCATTCCTTGTACTAATCTTCAAGTTTTCATTGACCAGGCTGGCCCCCTGTTGCTGTAATTCTGTCACT
GCTTCAGTAAATTACTGAAACAGACAAAGGCATCTCCTCTATATCGATGTGATTGCTGTTAGGAGCAAGTTTGTAACTGT
AGATGTAACTGATGCTTGCGGTTCTTGCAAAAGAGGAGTTTAACTAGTAGAATATATACAGTGTTCATATCAAATTAATC
AATGTCTCCTTGCTTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis