Browse Element(s) Details


Os.14555.1.S1_at

Description gb:AK068567.1
DB_XREF= gi:32978584
TID=Os.14555.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0032I20.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152A07, full insert sequence.
FL= gb:AK068567.1 gb:AK070924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2799010/11exocyst complex component Sec15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein
LOC_Os10g27980Os.21193.1.S1_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27980Os.21193.2.S1_x_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27990Os.14555.1.S1_at10/1110+14171418..14174836exocyst complex component Sec15, putative, expressed
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14555.1.S1_at--336--2531Chr10:14171978..14172002 (25 bp)
AACTTTCAGAGATTGCCTGGTCGAA
LOC_Os10g27990
Os.14555.1.S1_at--827--5591Chr10:14171956..14171980 (25 bp)
GAAATTAGGCAGCTCACCGATCTTC
LOC_Os10g27990
Os.14555.1.S1_at--869--9651Chr10:14171928..14171952 (25 bp)
TCAGCAACCAGCCAGAGAACTTCAT
LOC_Os10g27990
Os.14555.1.S1_at--934--5911Chr10:14171721..14171745 (25 bp)
GAGCTTAGCCATGTTGCATCAGAAA
LOC_Os10g27990
Os.14555.1.S1_at--317--6791Chr10:14171692..14171716 (25 bp)
GTTAGTGCTCCCTTGAAAAGACTGC
LOC_Os10g27990
Os.14555.1.S1_at--338--3751Chr10:14171668..14171692 (25 bp)
CTGCCAAGTGGTGGTTAGCCTTTTT
LOC_Os10g27990
Os.14555.1.S1_at--748--10791Chr10:14171627..14171651 (25 bp)
TTGTAACCTCCGTAGTTCGGCAACT
LOC_Os10g27990
Os.14555.1.S1_at--1026--791Chr10:14171546..14171570 (25 bp)
ATGGGCAGCACTTGCATTCTCTCTT
LOC_Os10g27990
Os.14555.1.S1_at--993--2231NONE
AAATTATGTACTTCGATGGCACTAG
NONE
Os.14555.1.S1_at--606--8431Chr10:14171471..14171495 (25 bp)
GGCCTAAGAATTTGATCTCCTGAAT
LOC_Os10g27990
Os.14555.1.S1_at--897--751Chr10:14171425..14171449 (25 bp)
ATGTAATCCGTCTATAGCATCTATT
LOC_Os10g27990
Target Sequence 
AACTTTCAGAGATTGCCTGGTCGAAATTAGGCAGCTCACCGATCTTCTGCTCAGCAACCAGCCAGAGAACTTCATGAACC
CTGTAATCAGGGAGAAGAATTTTGGATCCTTGGATCATAAGAAGGTGTCTATCATCTGTGACAAGTTTAGAGATGCTCCG
GAAAGCTTATTTGGGAGCNTTTCAGGCCGAAGTACAGTGCAAAGTGCTCGAAAGAAGTCCTTGGATGTGTTGAAGAGAAG
GCTGAAGGATTTTAGCTGAGCTTAGCCATGTTGCATCAGAAAATAAGTTAGTGCTCCCTTGAAAAGACTGCTGCCAAGTG
GTGGTTAGCCTTTTTAAGTTTCTTTTACCCCTTGTAACCTCCGTAGTTCGGCAACTCTATATGGAATTTATGTAGCTGTC
ATGGTTTGTATAGGTCAATTTTGACTGTTATTATGGGCAGCACTTGCATTCTCTCTTCAAATTATGTACTTCGATGGCAC
TAGTATACTAAATCACTGAGAGAATCAGGCCTAAGAATTTGATCTCCTGAATAGTTAAGTTCTCTTGTTTAAGATGTAAT
CCGTCTATAGCATCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis