Browse Element(s) Details


Os.21193.2.S1_x_at

Description gb:NM_196488.1
DB_XREF= gi:37534335
TID=Os.21193.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21193 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative proline transporter 1 (OSJNBa0032I20.1), mRNA.
PROD=putative proline transporter 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2798011/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein
LOC_Os10g27980Os.21193.1.S1_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27980Os.21193.2.S1_x_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27990Os.14555.1.S1_at10/1110+14171418..14174836exocyst complex component Sec15, putative, expressed
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015824biological_processL-proline transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015193molecular_functionL-proline transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21193.2.S1_x_at--417--9391Chr10:14170596..14170620 (25 bp)
TCGATCATCGTCATGTCCTACTGGA
LOC_Os10g27980
Os.21193.2.S1_x_at--246--1951Chr10:14170615..14170639 (25 bp)
ACTGGACCCTGGCATTCAGTGGGTA
LOC_Os10g27980
Os.21193.2.S1_x_at--368--9251Chr10:14170677..14170701 (25 bp)
TCCTCCCTGACTTTTCCAAGATGGA
LOC_Os10g27980
Os.21193.2.S1_x_at--291--1271Chr10:14170832..14170856 (25 bp)
AGATATACTGCAGGCCGACATTCGC
LOC_Os10g27980
Os.21193.2.S1_x_at--872--4591Chr10:14170879..14170903 (25 bp)
GCGAAAGACGCAGGCTACAGAGCAA
LOC_Os10g27980
Os.21193.2.S1_x_at--646--911Chr10:14170912..14170936 (25 bp)
AGGCTGGTGTATACCTCTGCATACA
LOC_Os10g27980
Os.21193.2.S1_x_at--887--3451Chr10:14170991..14171015 (25 bp)
CAGTCTGTGGAGCTGTTGGCTTTAC
LOC_Os10g27980
Os.21193.2.S1_x_at--1009--9071Chr10:14171030..14171054 (25 bp)
TGCTACCTGCACTGGCATTTCTGAA
LOC_Os10g27980
Os.21193.2.S1_x_at--829--2371Chr10:14171073..14171097 (25 bp)
AAACCCAGGATTACGCCATGCTGTG
LOC_Os10g27980
Os.21193.2.S1_x_at--160--9131Chr10:14171112..14171136 (25 bp)
TGCTGTCGCTGTCTTGTTCTCCATT
LOC_Os10g27980
Os.21193.2.S1_x_at--1146--31Chr10:14171134..14171158 (25 bp)
ATTGTCGGAGCTCTGGCATGCATCG
LOC_Os10g27980
Target Sequence 
TCGATCATCGTCATGTCCTACTGGACCCTGGCATTCAGTGGGTACTGGGCATTTGGCTCAGGAGTACAGCCCTACATCCT
GTCCTCCCTGACTTTTCCAAGATGGACAATTGTGATGGCAAATCTATTTGCAGTCATTCAGATCACTGGTTGCTTTCAGA
TATACTGCAGGCCGACATTCGCGCAATTTGAACAGCGGATTCAGGCGAAAGACGCAGGCTACAGAGCAAGGATGTGGAGG
CTGGTGTATACCTCTGCATACATGGTGGTGATCACCCTCATCTCTGCAGCAATGCCATTCTTTGGGGACTTTGTGTCAGT
CTGTGGAGCTGTTGGCTTTACCCCTCTGGACTTTGTGCTACCTGCACTGGCATTTCTGAAGGCCGGGAAGTTACCTGAAA
ACCCAGGATTACGCCATGCTGTGAAGGTGATCACCTCTGCTGTCGCTGTCTTGTTCTCCATTGTCGGAGCTCTGGCATGC
ATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21193.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis