Browse Element(s) Details


Os.46531.2.S1_at

Description gb:NM_196485.1
DB_XREF= gi:37534329
TID=Os.46531.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045B21.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045B21.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g274508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein
LOC_Os10g27980Os.21193.1.S1_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27980Os.21193.2.S1_x_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27990Os.14555.1.S1_at10/1110+14171418..14174836exocyst complex component Sec15, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46531.2.S1_at--366--9171NONE
TGCCCTCGCATTAAGATTCACATTT
NONE
Os.46531.2.S1_at--234--4551NONE
GCCCTCGCATTAAGATTCACATTTA
NONE
Os.46531.2.S1_at--530--4291NONE
CCTCGCATTAAGATTCACATTTATC
NONE
Os.46531.2.S1_at--109--4251Chr10:14143379..14143403 (25 bp)
CCGTCGTGAATGGACCACTAAACAG
LOC_Os10g27450
Os.46531.2.S1_at--131--7351Chr10:14143374..14143398 (25 bp)
GTGAATGGACCACTAAACAGGCCTC
LOC_Os10g27450
Os.46531.2.S1_at--1114--2951Chr10:14143371..14143395 (25 bp)
AATGGACCACTAAACAGGCCTCCGT
LOC_Os10g27450
Os.46531.2.S1_at--163--8511Chr10:14143369..14143393 (25 bp)
TGGACCACTAAACAGGCCTCCGTAA
LOC_Os10g27450
Os.46531.2.S1_at--479--5771Chr10:14143367..14143391 (25 bp)
GACCACTAAACAGGCCTCCGTAAAT
LOC_Os10g27450
Os.46531.2.S1_at--345--11Chr10:14143363..14143387 (25 bp)
ACTAAACAGGCCTCCGTAAATGAGC
LOC_Os10g27450
Os.46531.2.S1_at--1140--2371Chr10:14143360..14143384 (25 bp)
AAACAGGCCTCCGTAAATGAGCTAA
LOC_Os10g27450
Os.46531.2.S1_at--52--2131Chr10:14143358..14143382 (25 bp)
ACAGGCCTCCGTAAATGAGCTAAGC
LOC_Os10g27450
Target Sequence 
TGCCCTCGCATTAAGATTCACATTTATCGAAATCATTATTATGGAGCTAATGGGCCGAATCCGTCGTGAATGGACCACTA
AACAGGCCTCCGTAAATGAGCTAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46531.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis