Browse Element(s) Details


OsAffx.18423.1.S1_at

Description tigr:9638.m02354
TID=OsAffx.18423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2743011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18423.1.S1_at--1043--7191Chr10:14137656..14137680 (25 bp)
GTCGTACTCGCCGTGCTCACGCTCA
LOC_Os10g27430
OsAffx.18423.1.S1_at--919--4231Chr10:14137842..14137866 (25 bp)
CCGTTCTACATGTACGCGAGGGCTT
LOC_Os10g27430
OsAffx.18423.1.S1_at--345--6731Chr10:14137844..14137868 (25 bp)
GTTCTACATGTACGCGAGGGCTTGC
LOC_Os10g27430
OsAffx.18423.1.S1_at--713--3731Chr10:14137847..14137871 (25 bp)
CTACATGTACGCGAGGGCTTGCGAC
LOC_Os10g27430
OsAffx.18423.1.S1_at--669--2111Chr10:14137849..14137873 (25 bp)
ACATGTACGCGAGGGCTTGCGACGA
LOC_Os10g27430
OsAffx.18423.1.S1_at--576--9951Chr10:14137854..14137878 (25 bp)
TACGCGAGGGCTTGCGACGACGATC
LOC_Os10g27430
OsAffx.18423.1.S1_at--608--4611Chr10:14137857..14137881 (25 bp)
GCGAGGGCTTGCGACGACGATCTCT
LOC_Os10g27430
OsAffx.18423.1.S1_at--338--6131Chr10:14137859..14137883 (25 bp)
GAGGGCTTGCGACGACGATCTCTCC
LOC_Os10g27430
OsAffx.18423.1.S1_at--738--7591Chr10:14137861..14137885 (25 bp)
GGGCTTGCGACGACGATCTCTCCGG
LOC_Os10g27430
OsAffx.18423.1.S1_at--77--3791Chr10:14137880..14137904 (25 bp)
CTCCGGCGTCGCTCTGACGTTGGGA
LOC_Os10g27430
OsAffx.18423.1.S1_at--561--7231Chr10:14137887..14137911 (25 bp)
GTCGCTCTGACGTTGGGAGCGGCGG
LOC_Os10g27430
Target Sequence 
GTCGTACTCGCCGTGCTCACGCTCATCTGCGGCTCGACGACGTCGCCGCTGCCATGCGCCGGCAGCGCCGCGGTGGTGGC
GGCGGCGTCGTGCGTCCTCGCCGCCCGGCGGATGCTCGCCGTCCTGTCGCCGTGGTTCTACGTCGGCGGCGGCCCCGTGA
TCCGCCGCGGCCACGAGTGGTCGCCCCCGTTCTACATGTACGCGAGGGCTTGCGACGACGATCTCTCCGGCGTCGCTCTG
ACGTTGGGAGCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis