Browse Element(s) Details


OsAffx.30582.1.S1_s_at

Description tigr:9638.m02481
TID=OsAffx.30582.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1858010/11hypothetical protein
LOC_Os08g2979010/11hypothetical protein
LOC_Os10g2913010/11hypothetical protein
LOC_Os02g3613010/11hypothetical protein
LOC_Os06g153007/11hypothetical protein
LOC_Os10g239405/11hypothetical protein
LOC_Os07g162104/11hypothetical protein
LOC_Os11g287403/11hAT family dimerisation domain containing protein
LOC_Os04g058803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g396992/11
LOC_Os06g395502/11hypothetical protein
LOC_Os03g357102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g359702/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18540OsAffx.24308.1.S1_s_at11/112+10803654..10812274Protein of unknown function, DUF614 containing protein, expressed
LOC_Os02g18550Os.2249.1.S1_at11/112+10822641..1082567040S ribosomal protein S3a, putative, expressed
LOC_Os02g18560NANA2+10827394..10831164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18570Os.46862.1.S1_at5/112+10831878..10833756retrotransposon protein, putative, unclassified
LOC_Os02g18580OsAffx.30582.1.S1_s_at10/112+10836766..10837275hypothetical protein
LOC_Os02g18590Os.55650.1.A1_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22385.1.S1_x_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.21756.5.A1_x_at5/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.52979.1.S1_at4/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.20329.1.S1_at2/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.22646.1.S1_x_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22143.1.S1_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18600OsAffx.11549.1.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18600OsAffx.31811.4.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18610OsAffx.12103.1.S1_at11/112+10849474..10850435hypothetical protein
LOC_Os02g18610OsAffx.26471.1.S1_at1/112+10849474..10850435hypothetical protein
LOC_Os02g18620OsAffx.24310.1.S1_at11/112+10854612..10855586hypothetical protein
LOC_Os02g18630Os.54656.1.S1_at11/112+10857584..10859010F-box domain containing protein, expressed
LOC_Os02g18640Os.56259.1.S1_at11/112+10861340..10862860F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30582.1.S1_s_at--679--42939Chr12:21955497..21955517 (21 bp)
CCTAGAGTGCAATGAACAGTGTCTT
LOC_Os12g35970
OsAffx.30582.1.S1_s_at--329--36941Chr12:21955498..21955517 (20 bp)
CTAGAGTGCAATGAACAGTGTCTTT
LOC_Os12g35970
OsAffx.30582.1.S1_s_at--533--100322Chr11:16137460..16137628 (25 bp)
TAGAGTGCAATGAACAGTGTCTTTT
LOC_Os11g28740
OsAffx.30582.1.S1_s_at--8--13515Chr10:3294339..3294363 (25 bp)
AGAGTGCAATGAACAGTGTCTTTTT
NONE
OsAffx.30582.1.S1_s_at--872--61114Chr10:3294340..3294364 (25 bp)
GAGTGCAATGAACAGTGTCTTTTTC
NONE
OsAffx.30582.1.S1_s_at--970--11114Chr10:3294341..3294365 (25 bp)
AGTGCAATGAACAGTGTCTTTTTCC
NONE
OsAffx.30582.1.S1_s_at--123--73512Chr10:3294342..3294366 (25 bp)
GTGCAATGAACAGTGTCTTTTTCCT
NONE
OsAffx.30582.1.S1_s_at--1083--89911Chr10:3294343..3294367 (25 bp)
TGCAATGAACAGTGTCTTTTTCCTA
NONE
OsAffx.30582.1.S1_s_at--645--51910Chr10:3294344..3294368 (25 bp)
GCAATGAACAGTGTCTTTTTCCTAT
NONE
OsAffx.30582.1.S1_s_at--632--31911Chr10:3294345..3294369 (25 bp)
CAATGAACAGTGTCTTTTTCCTATT
NONE
Target Sequence 
CCTAGAGTGCAATGAACAGTGTCTTTTTCCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30582.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis