Browse Element(s) Details


Os.54656.1.S1_at

Description gb:AK106386.1
DB_XREF= gi:32991595
TID=Os.54656.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E06, full insert sequence.
FL= gb:AK106386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1863011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18570Os.46862.1.S1_at5/112+10831878..10833756retrotransposon protein, putative, unclassified
LOC_Os02g18580OsAffx.30582.1.S1_s_at10/112+10836766..10837275hypothetical protein
LOC_Os02g18590Os.55650.1.A1_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22385.1.S1_x_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.21756.5.A1_x_at5/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.52979.1.S1_at4/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.20329.1.S1_at2/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.22646.1.S1_x_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22143.1.S1_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18600OsAffx.11549.1.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18600OsAffx.31811.4.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18610OsAffx.12103.1.S1_at11/112+10849474..10850435hypothetical protein
LOC_Os02g18610OsAffx.26471.1.S1_at1/112+10849474..10850435hypothetical protein
LOC_Os02g18620OsAffx.24310.1.S1_at11/112+10854612..10855586hypothetical protein
LOC_Os02g18630Os.54656.1.S1_at11/112+10857584..10859010F-box domain containing protein, expressed
LOC_Os02g18640Os.56259.1.S1_at11/112+10861340..10862860F-box domain containing protein, expressed
LOC_Os02g18650Os.54891.1.S1_at11/112+10864067..10867220Pectinesterase-2 precursor, putative, expressed
LOC_Os02g18660Os.6598.1.S1_at11/112+10870288..10874504expressed protein
LOC_Os02g18670OsAffx.2672.1.S1_at11/112+10880661..10886276ABC transporter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54656.1.S1_at--604--4631Chr02:10858109..10858133 (25 bp)
GCGATTCCGGATTATATCTTGCTCA
LOC_Os02g18630
Os.54656.1.S1_at--999--111Chr02:10858068..10858092 (25 bp)
ATTCATGTTTGGCATCGTGCGACAG
LOC_Os02g18630
Os.54656.1.S1_at--779--6851Chr02:10857985..10858009 (25 bp)
GTTTGGTCAAGTTGCGAGGCCCGAT
LOC_Os02g18630
Os.54656.1.S1_at--979--7971Chr02:10857934..10857958 (25 bp)
GGATGCTCTTGTTTCACTTCGTAGA
LOC_Os02g18630
Os.54656.1.S1_at--144--9771Chr02:10857901..10857925 (25 bp)
TAATGCCGAGCTGTTCTTGACGATA
LOC_Os02g18630
Os.54656.1.S1_at--969--3611Chr02:10857886..10857910 (25 bp)
CTTGACGATAGACCGCGTGATCTTC
LOC_Os02g18630
Os.54656.1.S1_at--184--5511Chr02:10857835..10857859 (25 bp)
GAACAAGGTTTTCGAGATGGCTCCA
LOC_Os02g18630
Os.54656.1.S1_at--556--2031Chr02:10857759..10857783 (25 bp)
ACTTTCCCGGCTTTGAACTATGACG
LOC_Os02g18630
Os.54656.1.S1_at--237--1011Chr02:10857697..10857721 (25 bp)
AGGATTTTTCTCTAGTGCTTTATGC
LOC_Os02g18630
Os.54656.1.S1_at--76--7331Chr02:10857683..10857707 (25 bp)
GTGCTTTATGCGATGTCTAACCGAT
LOC_Os02g18630
Os.54656.1.S1_at--533--7151Chr02:10857669..10857693 (25 bp)
GTCTAACCGATTCTCAATTCAGCAT
LOC_Os02g18630
Target Sequence 
GCGATTCCGGATTATATCTTGCTCATCTGAAGGGGTTTCAGATTCATGTTTGGCATCGTGCGACAGACGGCGGTGGGAAT
GGTGGTGATTGGGAGATGGTTGATACCATGTCTCTGCATCAATCGTTTGGTCAAGTTGCGAGGCCCGATTGGGAGTCGGG
GGATCCTTCACTTGGGGATGCTCTTGTTTCACTTCGTAGAGTCGAGGATAATGCCGAGCTGTTCTTGACGATAGACCGCG
TGATCTTCCACATACATATTGCGAGCAGGACAGCGAACAAGGTTTTCGAGATGGCTCCAAAGGAAGATATTGGTTTTGAA
ATCTTTCCCTTCATGATGATATGGCCTCCCACTTTCCCGGCTTTGAACTATGACGATGACGATGATCAGTAATTCAGTAT
GAATGATCCCAGAGGATTTTTCTCTAGTGCTTTATGCGATGTCTAACCGATTCTCAATTCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis