Browse Element(s) Details


Os.6598.1.S1_at

Description gb:AK102886.1
DB_XREF= gi:32988095
TID=Os.6598.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112K05, full insert sequence.
FL= gb:AK102886.1 gb:AK073147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18600OsAffx.11549.1.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18600OsAffx.31811.4.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18610OsAffx.12103.1.S1_at11/112+10849474..10850435hypothetical protein
LOC_Os02g18610OsAffx.26471.1.S1_at1/112+10849474..10850435hypothetical protein
LOC_Os02g18620OsAffx.24310.1.S1_at11/112+10854612..10855586hypothetical protein
LOC_Os02g18630Os.54656.1.S1_at11/112+10857584..10859010F-box domain containing protein, expressed
LOC_Os02g18640Os.56259.1.S1_at11/112+10861340..10862860F-box domain containing protein, expressed
LOC_Os02g18650Os.54891.1.S1_at11/112+10864067..10867220Pectinesterase-2 precursor, putative, expressed
LOC_Os02g18660Os.6598.1.S1_at11/112+10870288..10874504expressed protein
LOC_Os02g18670OsAffx.2672.1.S1_at11/112+10880661..10886276ABC transporter family protein
LOC_Os02g18679NANA2+10894992..10895925NA
LOC_Os02g18690OsAffx.2671.1.S1_x_at11/112+10897363..10901911BURP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6598.1.S1_at--301--3251Chr02:10871911..10871935 (25 bp)
CAACCTTGCTTCCTTTGTGAACGGA
LOC_Os02g18660
Os.6598.1.S1_at--433--3171Chr02:10871935..10871959 (25 bp)
AATTGAGGCCCAGCATCCATGTGGA
LOC_Os02g18660
Os.6598.1.S1_at--682--7511Chr02:10871955..10871979 (25 bp)
GTGGATCAACCTTCAAGAGAGCTTT
LOC_Os02g18660
Os.6598.1.S1_at--690--331Chr02:10871997..10872021 (25 bp)
ATAAGGCTTGCACCCTGGAATCCAA
LOC_Os02g18660
Os.6598.1.S1_at--65--8911Chr02:10872048..10872072 (25 bp)
TGAGAATGCAGCTCCGTCTAGCAGA
LOC_Os02g18660
Os.6598.1.S1_at--1084--2391Chr02:10872118..10872142 (25 bp)
AAACATTGCGGTGCTGACATCCTTT
LOC_Os02g18660
Os.6598.1.S1_at--1069--1231Chr02:10874239..10874263 (25 bp)
AGTTGAGCTACTGGGTTTTCTGTCT
LOC_Os02g18660
Os.6598.1.S1_at--142--3891Chr02:10874258..10874282 (25 bp)
CTGTCTCTGGTTCTCGAGAGCTATT
LOC_Os02g18660
Os.6598.1.S1_at--519--7851Chr02:10874311..10874335 (25 bp)
GGTAGTATCCCTTTAATCTATGAGT
LOC_Os02g18660
Os.6598.1.S1_at--551--8811Chr02:10874451..10874475 (25 bp)
TGATATTGACCCGAAATCCCGTAAT
LOC_Os02g18660
Os.6598.1.S1_at--767--3831Chr02:10874477..10874501 (25 bp)
CTGCTTATTTTGTTGCCCGGTTTAT
LOC_Os02g18660
Target Sequence 
CAACCTTGCTTCCTTTGTGAACGGAATTGAGGCCCAGCATCCATGTGGATCAACCTTCAAGAGAGCTTTTGAGTTCATTA
GTGATGATAAGGCTTGCACCCTGGAATCCAAGATCANNANGCAGAAGATAGCGGAAGTGAGAATGCAGCTCCGTCTAGCA
GACACGAAGAAGGAAGTAGCCAATGCTTTGTTAGGATTGCTGGACTAAAACATTGCGGTGCTGACATCCTTTTTGTGCGA
TGGTTGTATTGAAGATTCAAGTTGCAGAAGATTTTTGGCTTGTGGAGCTAAGGGATATGACGTGACGAGTTGAGCTACTG
GGTTTTCTGTCTCTGGTTCTCGAGAGCTATTCTGTGAACGGTTGTTTATGTGATTAGATGGTAGTATCCCTTTAATCTAT
GAGTTAGCAATGGAGCTGATGACAGTTTAATTAACTCCTGTATCTATGATGGCATTTGGCTTTAATTAGGAGGTGTGCCT
AATTAAGGGGGTTCTATAACTTTGGGATATGCGTGATGCTGATATTGACCCGAAATCCCGTAATCCTGCTTATTTTGTTG
CCCGGTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis