Browse Element(s) Details


OsAffx.2671.1.S1_x_at

Description tigr:9630.m01770
TID=OsAffx.2671.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dehydration-induced protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1869011/11BURP domain containing protein, expressed
LOC_Os02g187508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18660Os.6598.1.S1_at11/112+10870288..10874504expressed protein
LOC_Os02g18670OsAffx.2672.1.S1_at11/112+10880661..10886276ABC transporter family protein
LOC_Os02g18679NANA2+10894992..10895925NA
LOC_Os02g18690OsAffx.2671.1.S1_x_at11/112+10897363..10901911BURP domain containing protein, expressed
LOC_Os02g18700OsAffx.2672.2.S1_at11/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18700OsAffx.4421.1.S1_at1/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18710OsAffx.12104.1.S1_at11/112+10920084..10920551hypothetical protein
LOC_Os02g18720OsAffx.24311.1.S1_at11/112+10922184..10923458hypothetical protein
LOC_Os02g18730NANA2+10925193..10928745retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2671.1.S1_x_at--423--3932Chr02:10931866..10931893 (25 bp)
CGGCGCCAAGGTTCATCTACAAGGA
LOC_Os02g18750
OsAffx.2671.1.S1_x_at--1003--9511Chr02:10897913..10897937 (25 bp)
TCTACAAGGACAAGGGCGACGCCGT
LOC_Os02g18690
OsAffx.2671.1.S1_x_at--217--532Chr02:10931955..10931979 (25 bp)
ATCCTCCCTGGATCCGACAAGGCGG
LOC_Os02g18750
OsAffx.2671.1.S1_x_at--1026--9652Chr02:10932110..10932134 (25 bp)
TCACCACGCTCGTGCACGGGAGGGA
LOC_Os02g18750
OsAffx.2671.1.S1_x_at--76--7732Chr02:10932192..10932216 (25 bp)
GGTGGCGTGCCACCCTATGCCATAT
LOC_Os02g18750
OsAffx.2671.1.S1_x_at--219--10151Chr02:10897573..10897597 (25 bp)
TATGCCATATCTATACGAGGTGTAC
LOC_Os02g18690
OsAffx.2671.1.S1_x_at--12--6152Chr02:10932223..10932247 (25 bp)
GAGGTGTACTACTGCCACCGGCCAG
LOC_Os02g18750
OsAffx.2671.1.S1_x_at--538--8472Chr02:10932257..10932281 (25 bp)
TGGCGCTGAGGGTCGACCTCCACGC
LOC_Os02g18750
OsAffx.2671.1.S1_x_at--656--1771Chr02:10897437..10897461 (25 bp)
ACCTGGGACAGTGCGTACTTCGAGC
LOC_Os02g18690
OsAffx.2671.1.S1_x_at--1128--6992Chr02:10932358..10932381 (24 bp)
GTACTTCGAGCTCCTCAAGGCAAGC
LOC_Os02g18750
OsAffx.2671.1.S1_x_at--722--9732Chr02:10932371..10932395 (25 bp)
TCAAGGCAAGCCGTGGCGACGCCAT
LOC_Os02g18750
Target Sequence 
CGGCGCCAAGGTTCATCTACAAGGACAAGGGCGACGCCGTGCCGTTCGACCTCCGCGCCATGGACGCCATCCTCGCCATG
TTCGGCATCCTCCCTGGATCCGACAAGGCGGCGCAGGTCGCCGACACCCTCCGCGCCTGCAGCGAGCTGACGGCCGCCGG
CGGCGGCGGCGAGGAGCCACGCGCCTGCTGCGCCACCTCCCGCGAGGCGGTGCTCGACTTCGCCGCCTCGGCGCTGGGCA
CCAGCGCGCCGCGCGCGGTCACCACGCTCGTGCACGGGAGGGAGCCCCGCAGGTACGTGGTAGCGGCCGACGGCGTCGCC
CGGATCGGCGGCGACGCCGTGGTGGCGTGCCACCCTATGCCATATCTATACGAGGTGTACTACTGCCACCGGCCAGCCGA
CGCGGTGGCGCTGAGGGTCGACCTCCACGCCGTCGCCGACGTGGGCCTGGGCGGCGCCACTGCCGTCGCCGTGTGCCACG
TCAACACCACCACCTGGGACAGTGCGTACTTCGAGCTCCTCAAGGCAAGCCGTGGCGACGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2671.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis