Browse Element(s) Details


OsAffx.12104.1.S1_at

Description tigr:9630.m01772
TID=OsAffx.12104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1871011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18679NANA2+10894992..10895925NA
LOC_Os02g18690OsAffx.2671.1.S1_x_at11/112+10897363..10901911BURP domain containing protein, expressed
LOC_Os02g18700OsAffx.2672.2.S1_at11/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18700OsAffx.4421.1.S1_at1/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18710OsAffx.12104.1.S1_at11/112+10920084..10920551hypothetical protein
LOC_Os02g18720OsAffx.24311.1.S1_at11/112+10922184..10923458hypothetical protein
LOC_Os02g18730NANA2+10925193..10928745retrotransposon protein, putative, LINE subclass
LOC_Os02g18740OsAffx.32001.1.S1_at10/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18740OsAffx.20687.1.S1_at6/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18750OsAffx.2671.1.S1_x_at8/112+10931589..10932523expressed protein
LOC_Os02g18750Os.54814.1.S1_at8/112+10931589..10932523expressed protein
LOC_Os02g18760OsAffx.28462.1.S1_at1/112+10934277..10938654retrotransposon protein, putative, unclassified
LOC_Os02g18770OsAffx.12105.1.S1_at11/112+10939563..10941269hypothetical protein
LOC_Os02g18770Os.57362.1.S1_at1/112+10939563..10941269hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_x_at7/112+10945254..10947535hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_at3/112+10945254..10947535hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12104.1.S1_at--450--971Chr02:10920162..10920186 (25 bp)
AGGAGCACCGTGGTTGGGCCCGGAG
LOC_Os02g18710
OsAffx.12104.1.S1_at--1016--5871Chr02:10920184..10920208 (25 bp)
GAGCGCAGGTGGTGGACGCACGCGA
LOC_Os02g18710
OsAffx.12104.1.S1_at--574--8351Chr02:10920214..10920238 (25 bp)
GGCGGCGGACCGACGATGGCACAGG
LOC_Os02g18710
OsAffx.12104.1.S1_at--985--2111Chr02:10920234..10920258 (25 bp)
ACAGGCGAGCGTGGGCAGACGAACT
LOC_Os02g18710
OsAffx.12104.1.S1_at--837--3391Chr02:10920249..10920273 (25 bp)
CAGACGAACTGGCTAATGGTGAACG
LOC_Os02g18710
OsAffx.12104.1.S1_at--718--1871Chr02:10920256..10920280 (25 bp)
ACTGGCTAATGGTGAACGACGACGA
LOC_Os02g18710
OsAffx.12104.1.S1_at--348--5791Chr02:10920276..10920300 (25 bp)
GACGACAACACAGCGGACAAGGCGG
LOC_Os02g18710
OsAffx.12104.1.S1_at--563--2571Chr02:10920310..10920334 (25 bp)
AACGGACGACGTCATGGCTAACATG
LOC_Os02g18710
OsAffx.12104.1.S1_at--878--4091Chr02:10920316..10920340 (25 bp)
CGACGTCATGGCTAACATGGGCGCG
LOC_Os02g18710
OsAffx.12104.1.S1_at--1019--1791Chr02:10920486..10920510 (25 bp)
ACCGCCTCAAGATTTACTCGATCAT
LOC_Os02g18710
OsAffx.12104.1.S1_at--301--191Chr02:10920497..10920521 (25 bp)
ATTTACTCGATCATCGAGGACCACG
LOC_Os02g18710
Target Sequence 
AGGAGCACCGTGGTTGGGCCCGGAGCGCAGGTGGTGGACGCACGCGAGCGCAGGCGGCGGACCGACGATGGCACAGGCGA
GCGTGGGCAGACGAACTGGCTAATGGTGAACGACGACGACAACACAGCGGACAAGGCGGCTGACGGTGAACGGACGACGT
CATGGCTAACATGGGCGCGGGAGCGGGCGGTGGACGATGACGATGGCGGCGACGACTGGAAAGAAGATGAGTTGAGAGTA
GGGGAGCCCCACACCGTTTCCCCCGCTGCTAGACACCACCACCATCTTGTCGCCGCCGCCGCTAGATACTACCACCATCT
CACCACCGCCTCAAGATTTACTCGATCATCGAGGACCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis