Browse Element(s) Details


Os.54814.1.S1_at

Description gb:AK106817.1
DB_XREF= gi:32992026
TID=Os.54814.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D04, full insert sequence.
FL= gb:AK106817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g187508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18700OsAffx.2672.2.S1_at11/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18700OsAffx.4421.1.S1_at1/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18710OsAffx.12104.1.S1_at11/112+10920084..10920551hypothetical protein
LOC_Os02g18720OsAffx.24311.1.S1_at11/112+10922184..10923458hypothetical protein
LOC_Os02g18730NANA2+10925193..10928745retrotransposon protein, putative, LINE subclass
LOC_Os02g18740OsAffx.32001.1.S1_at10/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18740OsAffx.20687.1.S1_at6/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18750OsAffx.2671.1.S1_x_at8/112+10931589..10932523expressed protein
LOC_Os02g18750Os.54814.1.S1_at8/112+10931589..10932523expressed protein
LOC_Os02g18760OsAffx.28462.1.S1_at1/112+10934277..10938654retrotransposon protein, putative, unclassified
LOC_Os02g18770OsAffx.12105.1.S1_at11/112+10939563..10941269hypothetical protein
LOC_Os02g18770Os.57362.1.S1_at1/112+10939563..10941269hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_x_at7/112+10945254..10947535hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_at3/112+10945254..10947535hypothetical protein
LOC_Os02g18790OsAffx.2674.1.S1_at11/112+10955205..10955979hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54814.1.S1_at--531--8491Chr02:10932427..10932451 (25 bp)
TGGCTAGCCAATTGAGACGATATTA
LOC_Os02g18750
Os.54814.1.S1_at--826--5991Chr02:10932440..10932464 (25 bp)
GAGACGATATTAGTATTTCCTACAA
LOC_Os02g18750
Os.54814.1.S1_at--454--192Chr02:10932454..10932478 (25 bp)
ATTTCCTACAAACACCTGATCGTAG
LOC_Os02g18750
Os.54814.1.S1_at--407--2391Chr02:10932463..10932487 (25 bp)
AAACACCTGATCGTAGCTACTCAAC
LOC_Os02g18750
Os.54814.1.S1_at--1162--8831Chr02:10932470..10932494 (25 bp)
TGATCGTAGCTACTCAACCTTCCAT
LOC_Os02g18750
Os.54814.1.S1_at--1108--6951Chr02:10932475..10932499 (25 bp)
GTAGCTACTCAACCTTCCATGATTG
LOC_Os02g18750
Os.54814.1.S1_at--377--4851Chr02:10932478..10932502 (25 bp)
GCTACTCAACCTTCCATGATTGATG
LOC_Os02g18750
Os.54814.1.S1_at--1055--2631Chr02:10932485..10932509 (25 bp)
AACCTTCCATGATTGATGCTTGATG
LOC_Os02g18750
Os.54814.1.S1_at--683--631Chr02:10932500..10932524 (25 bp)
ATGCTTGATGCATCTCTCGCTACTA
NONE
Os.54814.1.S1_at--1043--8851Chr02:10932505..10932529 (25 bp)
TGATGCATCTCTCGCTACTACTTCA
NONE
Os.54814.1.S1_at--239--9513Chr08:26747262..26747566 (25 bp)
TCTCTCGCTACTACTTCATCCGTTT
NONE
Target Sequence 
TGGCTAGCCAATTGAGACGATATTAGTATTTCCTACAAACACCTGATCGTAGCTACTCAACCTTCCATGATTGATGCTTG
ATGCATCTCTCGCTACTACTTCATCCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis