Browse Element(s) Details


Os.54891.1.S1_at

Description gb:AK107019.1
DB_XREF= gi:32992228
TID=Os.54891.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H06, full insert sequence.
FL= gb:AK107019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1865011/11Pectinesterase-2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18590Os.55650.1.A1_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22385.1.S1_x_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.21756.5.A1_x_at5/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.52979.1.S1_at4/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.20329.1.S1_at2/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.22646.1.S1_x_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22143.1.S1_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18600OsAffx.11549.1.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18600OsAffx.31811.4.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18610OsAffx.12103.1.S1_at11/112+10849474..10850435hypothetical protein
LOC_Os02g18610OsAffx.26471.1.S1_at1/112+10849474..10850435hypothetical protein
LOC_Os02g18620OsAffx.24310.1.S1_at11/112+10854612..10855586hypothetical protein
LOC_Os02g18630Os.54656.1.S1_at11/112+10857584..10859010F-box domain containing protein, expressed
LOC_Os02g18640Os.56259.1.S1_at11/112+10861340..10862860F-box domain containing protein, expressed
LOC_Os02g18650Os.54891.1.S1_at11/112+10864067..10867220Pectinesterase-2 precursor, putative, expressed
LOC_Os02g18660Os.6598.1.S1_at11/112+10870288..10874504expressed protein
LOC_Os02g18670OsAffx.2672.1.S1_at11/112+10880661..10886276ABC transporter family protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54891.1.S1_at--628--8391Chr02:10864416..10864440 (25 bp)
GGCCGTGGAAGCTGTACTCGAGGGT
LOC_Os02g18650
Os.54891.1.S1_at--585--711Chr02:10864384..10864408 (25 bp)
ATGATGTCGTACATCGGCGGGCACG
LOC_Os02g18650
Os.54891.1.S1_at--318--7631Chr02:10864299..10864323 (25 bp)
GGGAGTACATGAACTACGGCCCCGG
LOC_Os02g18650
Os.54891.1.S1_at--424--4651Chr02:10864236..10864260 (25 bp)
GCGTCATCAACGACAGCGCCGAGGC
LOC_Os02g18650
Os.54891.1.S1_at--315--9511Chr02:10864134..10864158 (25 bp)
TCTCGCTGTAGCTAGCTCAACCATA
LOC_Os02g18650
Os.54891.1.S1_at--1018--6951Chr02:10864127..10864151 (25 bp)
GTAGCTAGCTCAACCATATGCTGCA
LOC_Os02g18650
Os.54891.1.S1_at--1082--9991Chr02:10864122..10864146 (25 bp)
TAGCTCAACCATATGCTGCATGCGC
LOC_Os02g18650
Os.54891.1.S1_at--1053--2631Chr02:10864116..10864140 (25 bp)
AACCATATGCTGCATGCGCATATAT
LOC_Os02g18650
Os.54891.1.S1_at--946--231Chr02:10864091..10864115 (25 bp)
ATATATACCTGTTGCGTTGGCATGT
LOC_Os02g18650
Os.54891.1.S1_at--675--311Chr02:10864087..10864111 (25 bp)
ATACCTGTTGCGTTGGCATGTGCAC
LOC_Os02g18650
Os.54891.1.S1_at--217--6611Chr02:10864076..10864100 (25 bp)
GTTGGCATGTGCACGCACGTACGTA
LOC_Os02g18650
Target Sequence 
GGCCGTGGAAGCTGTACTCGAGGGTGGTGGTGATGATGTCGTACATCGGCGGGCACGTGCCGCCGGAGGGGTGGCTGGCG
TGGAACGCGACGTTCGCGCTCGACACGCTCTACTACGGGGAGTACATGAACTACGGCCCCGGGGCCGGGGTCGCCGGGCG
CGTGGCGTGGCCGGGCCACCGCGTCATCAACGACAGCGCCGAGGCGGAGCGGTTCACGGTGGCGCGCTTCATCTCCGGCG
CGTCGTGGCTGCCGGCCACCGGCGTCTCCTTCCTCTCCGGCCTCTCGCTGTAGCTAGCTCAACCATATGCTGCATGCGCA
TATATATATATACCTGTTGCGTTGGCATGTGCACGCACGTACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis