Browse Element(s) Details


OsAffx.30606.1.S1_at

Description tigr:9638.m02591
TID=OsAffx.30606.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30180OsAffx.30605.1.S1_at10/1110+15359380..15360457Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30190OsAffx.18461.1.S1_at11/1110+15360834..15363711potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os10g30200OsAffx.8088.1.S1_at11/1110+15366285..15367061Skp1 family, dimerisation domain containing protein
LOC_Os10g30210OsAffx.30606.1.S1_at11/1110+15368898..15370644expressed protein
LOC_Os10g30220OsAffx.18462.1.S1_at11/1110+15371114..15371945hypothetical protein
LOC_Os10g30230OsAffx.6818.1.S1_at11/1110+15373624..15374238hypothetical protein
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30606.1.S1_at--349--5371Chr10:15369399..15369423 (25 bp)
GAAGACGCGGAGAGCCATCGCTCCT
LOC_Os10g30210
OsAffx.30606.1.S1_at--56--3811Chr10:15369343..15369367 (25 bp)
CTCCGTCGCCGGACCTGATGGTGCA
LOC_Os10g30210
OsAffx.30606.1.S1_at--828--4191Chr10:15369291..15369315 (25 bp)
CCCCATGATGGGTATAGGGTCGACG
LOC_Os10g30210
OsAffx.30606.1.S1_at--392--4011Chr10:15369214..15369238 (25 bp)
CGTCGCACACGGTGGCCGTCATGGT
LOC_Os10g30210
OsAffx.30606.1.S1_at--1038--8511Chr10:15369190..15369214 (25 bp)
TGGACTGCGACATGTACGACACCTT
LOC_Os10g30210
OsAffx.30606.1.S1_at--639--2111Chr10:15369181..15369205 (25 bp)
ACATGTACGACACCTTGAGAGCAGA
LOC_Os10g30210
OsAffx.30606.1.S1_at--373--3371Chr10:15369171..15369195 (25 bp)
CACCTTGAGAGCAGAAGGCTGGGTC
LOC_Os10g30210
OsAffx.30606.1.S1_at--632--9471Chr10:15369082..15369106 (25 bp)
TCTGCGTGTCCGACTGCCCGGAGCA
LOC_Os10g30210
OsAffx.30606.1.S1_at--852--3911Chr10:15369005..15369029 (25 bp)
CGGCCGCACGTGGAAGGGTTCCTCA
LOC_Os10g30210
OsAffx.30606.1.S1_at--661--8491Chr10:15368995..15369019 (25 bp)
TGGAAGGGTTCCTCAGCTTCGACCT
LOC_Os10g30210
OsAffx.30606.1.S1_at--810--9251Chr10:15368986..15369010 (25 bp)
TCCTCAGCTTCGACCTCGGCAAGGG
LOC_Os10g30210
Target Sequence 
GAAGACGCGGAGAGCCATCGCTCCTCCTCCGTCGCCGCCGGCGACGACGCATCCTCCTCCGTCGCCGGACCTGATGGTGC
AGGTGCCGGCGCCTCCTGCTCCTCCCACCCCCATGATGGGTATAGGGTCGACGGTGGCGGTGCAGGGCTCCGTTGCCGCC
GCCGCCGCCGCCGCCACGGCGCCGTCGTCGCACACGGTGGCCGTCATGGTGGACTGCGACATGTACGACACCTTGAGAGC
AGAAGGCTGGGTCGAGATGGAGACGGCGGCGGCGGCGACTCCGGCGAGGCGGCGCGGGCCGGTGGCGCGGTGGGGAGTCT
GCGTGTCCGACTGCCCGGAGCACGAGCTCGGGTGGGGGGTGCGGATCGGCGGCACGGCGGAGAGGAACGCGCACCGGCCG
CACGTGGAAGGGTTCCTCAGCTTCGACCTCGGCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis