Browse Element(s) Details


OsAffx.30610.1.S1_at

Description tigr:9638.m02614
TID=OsAffx.30610.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3044011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30390OsAffx.20305.1.S1_at11/1110+15466886..15470494Cytochrome P450 family protein, expressed
LOC_Os10g30399NANA10+15475440..15475719NA
LOC_Os10g30410Os.46533.1.S1_at11/1110+15477261..15481625Cytochrome P450 family protein, expressed
LOC_Os10g30420Os.46788.1.S1_a_at10/1110+15483705..15488395Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os10g30430OsAffx.20304.1.S1_at11/1110+15491598..15492137heavy metal-associated domain containing protein
LOC_Os10g30440OsAffx.30610.1.S1_at11/1110+15494235..15494615hypothetical protein
LOC_Os10g30450OsAffx.6821.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_s_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30460Os.29992.2.S1_x_at3/1110+15501344..15502451hypothetical protein
LOC_Os10g30460OsAffx.7866.1.S1_x_at1/1110+15501344..15502451hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30610.1.S1_at--827--10631Chr10:15494552..15494576 (25 bp)
TTCGACCTGACCTGGAGGAGCAACT
LOC_Os10g30440
OsAffx.30610.1.S1_at--1104--5811Chr10:15494549..15494573 (25 bp)
GACCTGACCTGGAGGAGCAACTCCA
LOC_Os10g30440
OsAffx.30610.1.S1_at--1113--6171Chr10:15494538..15494562 (25 bp)
GAGGAGCAACTCCAAGCACTGCACG
LOC_Os10g30440
OsAffx.30610.1.S1_at--766--5151Chr10:15494533..15494557 (25 bp)
GCAACTCCAAGCACTGCACGTCGAA
LOC_Os10g30440
OsAffx.30610.1.S1_at--776--2551Chr10:15494531..15494555 (25 bp)
AACTCCAAGCACTGCACGTCGAACT
LOC_Os10g30440
OsAffx.30610.1.S1_at--96--2731Chr10:15494525..15494549 (25 bp)
AAGCACTGCACGTCGAACTTCCCGG
LOC_Os10g30440
OsAffx.30610.1.S1_at--749--1731Chr10:15494498..15494522 (25 bp)
ACCATCACCCGTCTCGCTGGAATGT
LOC_Os10g30440
OsAffx.30610.1.S1_at--1051--7111Chr10:15494488..15494512 (25 bp)
GTCTCGCTGGAATGTCCACCGTCAC
LOC_Os10g30440
OsAffx.30610.1.S1_at--676--8191Chr10:15494480..15494504 (25 bp)
GGAATGTCCACCGTCACCTTGTCAA
LOC_Os10g30440
OsAffx.30610.1.S1_at--1020--2851Chr10:15494478..15494502 (25 bp)
AATGTCCACCGTCACCTTGTCAACG
LOC_Os10g30440
OsAffx.30610.1.S1_at--639--1551Chr10:15494288..15494312 (25 bp)
AGCTTCTCCTTCACGGAGGAGACCG
LOC_Os10g30440
Target Sequence 
TTCGACCTGACCTGGAGGAGCAACTCCAAGCACTGCACGTCGAACTTCCCGGCGACCATCACCCGTCTCGCTGGAATGTC
CACCGTCACCTTGTCAACGCCGGGGACGGCGACAGCCGGCGAGGACTCCGACGTCGAGGCGCCGTTGCCGCTACCGCCGG
CACCCCCGGCTACGGCCGCGTTCTCGGCGGCGGCATCGTCCAGCTTCTCCTTCACGGAGGAGACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis