Browse Element(s) Details


OsAffx.30618.1.S1_at

Description tigr:9632.m00793
TID=OsAffx.30618.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2960010/11hypothetical protein
LOC_Os04g087506/11hypothetical protein
LOC_Os10g309603/11hypothetical protein
LOC_Os01g620901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29560NANA1+16892399..16898286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29570NANA1+16899062..16899709hypothetical protein
LOC_Os01g29580NANA1+16902613..16905757retrotransposon protein, putative, unclassified
LOC_Os01g29590NANA1+16906517..16911802retrotransposon protein, putative, unclassified
LOC_Os01g29600OsAffx.30618.1.S1_at10/111+16915402..16916028hypothetical protein
LOC_Os01g29610Os.43072.1.S1_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.43072.1.S1_x_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.5.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.17455.1.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_x_at5/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_at4/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.2.S1_at2/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.4.A1_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.12010.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610OsAffx.3097.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29620OsAffx.19542.3.S1_x_at3/111+16928784..16932692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29640OsAffx.23450.1.S1_at8/111+16939592..16940065hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30618.1.S1_at--182--1533Chr10:15830407..15830431 (25 bp)
AGCAGAGGCGCTTGGAGACGGTGAC
LOC_Os10g30960
OsAffx.30618.1.S1_at--915--2153Chr10:15830438..15830462 (25 bp)
ACAGCGGCTGCGTAGGCGGAGGCAA
LOC_Os10g30960
OsAffx.30618.1.S1_at--965--3452Chr10:15830679..15830703 (25 bp)
CAGTGCTCGGTAGCGGCGCGAGAGA
LOC_Os10g30960
OsAffx.30618.1.S1_at--602--3774Chr10:15830762..15830786 (25 bp)
CTCGTCTTCCACATATCACAACGAA
NONE
OsAffx.30618.1.S1_at--1018--4092Chr04:4735934..4735958 (25 bp)
GGGGCCTATACCTGATTACGAAGAA
LOC_Os04g08750
OsAffx.30618.1.S1_at--214--10312Chr04:4735898..4735922 (25 bp)
TTTCGCAAAAATCCAACCTCGCACT
LOC_Os04g08750
OsAffx.30618.1.S1_at--559--2412Chr04:4735892..4735916 (25 bp)
AAAAATCCAACCTCGCACTGTAGCT
NONE
OsAffx.30618.1.S1_at--92--3252Chr04:4735885..4735909 (25 bp)
CAACCTCGCACTGTAGCTACTGTAG
NONE
OsAffx.30618.1.S1_at--508--4293Chr04:2069998..2070019 (22 bp)
CCTCGCACTGTAGCTACTGTAGCAA
NONE
OsAffx.30618.1.S1_at--544--1577Chr04:2070006..2070030 (25 bp)
AGCTACTGTAGCAAAATCCGACGTG
NONE
OsAffx.30618.1.S1_at--584--3874Chr10:15830897..15830921 (25 bp)
CTGTAGCAAAATCCGACGTGGACAC
NONE
Target Sequence 
AGCAGAGGCGCTTGGAGACGGTGACGCGACGACAGCGGCTGCGTAGGCGGAGGCAATGGCGCGANGGGAAGGCGGAGGCG
AGGGTGGGGGAGGAGACGGCGGAGGGAGAGGGAAAGGGAGAGGGAGAGAGTGGGGGACGAGAGGGCNGAGGGGAGACGGA
CGGCGGCAGCTCGGCCNGCGATGGGNACGGCGGGAGGCGGAGGTGGCAGCGCGATGGGGAGGCGGCGGCGGNNNNNNNNN
NNNNNNCGCGAGGCNACGGGGACGGCGTGAGGGGGAGGCGGAGGCGGCAGTGCTCGGTAGCGGCGCGAGAGAGGGAGAGC
AAGCGGCTAGGGTTTGAGGGGNNNGNNNNNGTNNNNNTNTNNTTTCGAAAAAGCCCCTCGTCTTCCACATATCACAACGA
ANCCCCTGTCCGCGATTTTTTCTNTTCAAACACAGNACGCGAGGGGCCTATACCTGATTACGAAGAANCGGAGGGNTTTT
TCGCAAAAATCCAACCTCGCACTGTAGCTACTGTAGCAAAATCCGACGTGGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis