Browse Element(s) Details


Os.17455.1.S1_at

Description gb:BI812884
DB_XREF= gi:16578789
DB_XREF=G003E02
CLONE=G003E02
TID=Os.17455.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17455 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g296106/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29560NANA1+16892399..16898286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29570NANA1+16899062..16899709hypothetical protein
LOC_Os01g29580NANA1+16902613..16905757retrotransposon protein, putative, unclassified
LOC_Os01g29590NANA1+16906517..16911802retrotransposon protein, putative, unclassified
LOC_Os01g29600OsAffx.30618.1.S1_at10/111+16915402..16916028hypothetical protein
LOC_Os01g29610Os.43072.1.S1_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.43072.1.S1_x_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.5.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.17455.1.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_x_at5/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_at4/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.2.S1_at2/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.4.A1_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.12010.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610OsAffx.3097.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29620OsAffx.19542.3.S1_x_at3/111+16928784..16932692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29640OsAffx.23450.1.S1_at8/111+16939592..16940065hypothetical protein
LOC_Os01g29650NANA1+16943797..16946112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29660OsAffx.22947.1.S1_x_at9/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.3.S1_x_at6/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.2.S1_x_at5/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17455.1.S1_at--423--7411NONE
GTGATTTTCGCAAATACTCCTATAT
NONE
Os.17455.1.S1_at--125--9911NONE
TACTCCTATATATTGGCTGCTACCT
NONE
Os.17455.1.S1_at--450--8491NONE
TGGCTGCTACCTCATAAAAATACAT
NONE
Os.17455.1.S1_at--9--2111NONE
ACATCCACTGGATCAATGTTCCTCT
NONE
Os.17455.1.S1_at--189--8813Chr04:4744198..4744222 (25 bp)
TGTTCCTCTAGCACTGATAGGCCTA
NONE
Os.17455.1.S1_at--277--10033Chr04:4744215..4744239 (25 bp)
TAGGCCTAGAAACAAGGTTGTCCTT
NONE
Os.17455.1.S1_at--76--6651Chr01:16924082..16924102 (21 bp)
GTTGTTTCCCTTAGTGTGTGCGCAC
LOC_Os01g29610
Os.17455.1.S1_at--1034--7472Chr01:16924091..16924115 (25 bp)
GTGTGTGCGCACTATGATAAGATGT
LOC_Os01g29610
Os.17455.1.S1_at--654--153Chr04:4744287..4744311 (25 bp)
ATTAGTATGTACCTGCAGGTCTGCA
NONE
Os.17455.1.S1_at--319--1013Chr04:4744303..4744327 (25 bp)
AGGTCTGCAGGTTCTTTTGAATGTG
NONE
Os.17455.1.S1_at--1158--10371NONE
TTTTCAGGATGGTTGATGCGATGCT
NONE
Target Sequence 
GTGATTTTCGCAAATACTCCTATATATTGGCTGCTACCTCATAAAAATACATCCACTGGATCAATGTTCCTCTAGCACTG
ATAGGCCTAGAAACAAGGTTGTCCTTGTTGTTTCCCTTAGTGTGTGCGCACTATGATAAGATGTTACTATTAGGGTATTA
GTATGTACCTGCAGGTCTGCAGGTTCTTTTGAATGTGATTTAATTAGCTAATGTTTGCTTTCATTTCAACCTGTTTACAT
TTTTCAGGATGGTTGATGCGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis