Browse Element(s) Details


Os.19410.5.S1_at

Description gb:AK101643.1
DB_XREF= gi:32986852
TID=Os.19410.5
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055N03, full insert sequence.
FL= gb:AK101643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g296106/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29560NANA1+16892399..16898286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29570NANA1+16899062..16899709hypothetical protein
LOC_Os01g29580NANA1+16902613..16905757retrotransposon protein, putative, unclassified
LOC_Os01g29590NANA1+16906517..16911802retrotransposon protein, putative, unclassified
LOC_Os01g29600OsAffx.30618.1.S1_at10/111+16915402..16916028hypothetical protein
LOC_Os01g29610Os.43072.1.S1_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.43072.1.S1_x_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.5.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.17455.1.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_x_at5/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_at4/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.2.S1_at2/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.4.A1_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.12010.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610OsAffx.3097.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29620OsAffx.19542.3.S1_x_at3/111+16928784..16932692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29640OsAffx.23450.1.S1_at8/111+16939592..16940065hypothetical protein
LOC_Os01g29650NANA1+16943797..16946112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29660OsAffx.22947.1.S1_x_at9/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.3.S1_x_at6/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.2.S1_x_at5/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19410.5.S1_at--915--1493Chr04:4741516..4741540 (25 bp)
AGCACATGTCTTGATTCTCTTGAGG
NONE
Os.19410.5.S1_at--999--7133Chr04:4741523..4741547 (25 bp)
GTCTTGATTCTCTTGAGGGCTCAAT
NONE
Os.19410.5.S1_at--733--10753Chr04:4741535..4741559 (25 bp)
TTGAGGGCTCAATCACGGACCCCTT
NONE
Os.19410.5.S1_at--1088--5811Chr10:15825430..15825454 (25 bp)
GACCCCTTCGGTAATTTGTATTCAT
NONE
Os.19410.5.S1_at--288--5533Chr04:4741593..4741616 (24 bp)
GAAACTGTGGAGACCAAGGTGTCAA
NONE
Os.19410.5.S1_at--314--2812Chr01:16921269..16921293 (25 bp)
AAGATTGGAACTTACGCATTAACAA
LOC_Os01g29610
Os.19410.5.S1_at--168--2132Chr04:4741717..4741741 (25 bp)
ACAGAGTGACAAACCTGAAACTATA
NONE
Os.19410.5.S1_at--167--734Chr05:5785618..5785671 (24 bp)
ATGATTTATTTTTCTCAGCTGATGA
NONE
Os.19410.5.S1_at--156--9011NONE
TGAATCAGTATTGCTTTTCTTGACA
NONE
Os.19410.5.S1_at--167--10332Chr04:4741792..4741815 (24 bp)
TTTCTTGACAAATGACCTCTCTCTC
NONE
Os.19410.5.S1_at--460--1191NONE
AGTAGAAATCAGATGCTTTCCTTTG
NONE
Target Sequence 
AGCACATGTCTTGATTCTCTTGAGGGCTCAATCACGGACCCCTTCGGTAATTTGTATTCATCCTTGAAAAGTGAAATGAA
ACTGTGGAGACCAAGGTGTCAAAGACAGAAGAAACTTGTGTAGTTATCATTTTAACTTGACAAAGGTATGCTAAGATTGG
AACTTACGCATTAACAAAAAAAAAGTGGAACAACATTATTTACTAAACAGAGTGACAAACCTGAAACTATAATATGATTT
ATTTTTCTCAGCTGATGATTAGTTCTGAATCAGTATTGCTTTTCTTGACAAATGACCTCTCTCTCTCTCTCTCAGCATGA
TGACAGCATTATTTCTATACATGGGGATATTGTGTATCTGGATAAGAATAGCATTATTTGTAGATAAGACATATATAAGA
AGTAAATGTATTTCTAATTTATAAACTGAGAATGTATTATTAAGTGCTTTAACATGTCATATGCAGAAGTTGCTGGAATG
CTAGATAATCTTGTCCTCTTTTAACATAGCATGAGAATTATAGTAGAAATCAGATGCTTTCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19410.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis