Browse Element(s) Details


OsAffx.30641.1.S1_at

Description tigr:9638.m02824
TID=OsAffx.30641.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative glycine-rich RNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3250011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32410Os.46500.2.S1_at7/1110+16664536..16665604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g32420OsAffx.20272.1.S1_at7/1110+16669329..16669754hypothetical protein
LOC_Os10g32444Os.20246.1.S1_at11/1110+16676065..16677333expressed protein
LOC_Os10g32470Os.46467.1.S1_at11/1110+16678291..16681525expressed protein
LOC_Os10g32470Os.46467.2.S1_x_at11/1110+16678291..16681525expressed protein
LOC_Os10g32500OsAffx.30641.1.S1_at11/1110+16689531..16692082expressed protein
LOC_Os10g32509NANA10+16696487..16696798hypothetical protein
LOC_Os10g32520Os.8753.4.S1_x_at9/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.1.S1_at8/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.4.S1_at4/1110+16698772..16705749expressed protein
LOC_Os10g32520OsAffx.1293.1.S1_x_at1/1110+16698772..16705749expressed protein
LOC_Os10g32540Os.10154.1.S1_at9/1110+16710651..16718168SAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30641.1.S1_at--809--5951Chr10:16690264..16690288 (25 bp)
GAGAATCTTTCTCAACACCAAGGTT
LOC_Os10g32500
OsAffx.30641.1.S1_at--392--6211Chr10:16690289..16690313 (25 bp)
GAGGCTGGTGACTCTTTAACACAAA
LOC_Os10g32500
OsAffx.30641.1.S1_at--459--7051Chr10:16690514..16690536 (23 bp)
GTAACCACCCTGTAGTTAATGCGGA
LOC_Os10g32500
OsAffx.30641.1.S1_at--248--2531Chr10:16690561..16690703 (25 bp)
AACTATCTGTTATGTTCTTTCTGCC
LOC_Os10g32500
OsAffx.30641.1.S1_at--118--9491Chr10:16690698..16690722 (25 bp)
TCTGCCATTCGGGAGGTTGTCAAGA
LOC_Os10g32500
OsAffx.30641.1.S1_at--1126--2891Chr10:16691469..16691492 (24 bp)
AAGGTTCCAGGTCAAGTCCAGCTAC
LOC_Os10g32500
OsAffx.30641.1.S1_at--674--5431Chr10:16691514..16691538 (25 bp)
GAACCTTTCCTGGACTGATTTCAGA
LOC_Os10g32500
OsAffx.30641.1.S1_at--1096--5571Chr10:16691537..16691561 (25 bp)
GAAATATACCTTTTGACCCTCGATC
LOC_Os10g32500
OsAffx.30641.1.S1_at--522--5471Chr10:16691833..16691857 (25 bp)
GAACTGCATGAACTTTGCTGCACAT
LOC_Os10g32500
OsAffx.30641.1.S1_at--583--7971Chr10:16691915..16691939 (25 bp)
GGATGCCATTTGAACGTCTTATCAC
LOC_Os10g32500
OsAffx.30641.1.S1_at--82--5131Chr10:16691953..16691977 (25 bp)
GCACAGCTTGTTTCTGGCTACTTTA
LOC_Os10g32500
Target Sequence 
GAGAATCTTTCTCAACACCAAGGTTGAGGCTGGTGACTCTTTAACACAAACGAATGGCAGAGAAGCACGGTTTTGGACAT
TTGTGGAAGAAGACAATGGTAACCACCCTGTAGTTAATGCGGATTACATACCCCCTCATTGGAATGAAACTATCTGTTAT
GTTCTTTCTGCCATTCGGGAGGTTGTCAAGAAGAAATGCAAAATAGTGGATTTGAACAAGACTTCAAAGTTTCGTGATGC
TGGACAACAAGGTTCCAGGTCAAGTCCAGCTACCAGTAGATCTGTTATTGAAGAGAACCTTTCCTGGACTGATTTCAGAA
ATATACCTTTTGACCCTCGATCCAGACTGGGGTTCATTGACCAAGACGAACTGCATGAACTTTGCTGCACATCAATACAC
AGTGATATTCTCACTGATCACTGGATTGGTGGAGCATTAGTATGCACTAGGATGCCATTTGAACGTCTTATCACTGATAT
GTTTGACGCACAGCTTGTTTCTGGCTACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis