Browse Element(s) Details


OsAffx.30645.1.S1_at

Description tigr:9638.m02855
TID=OsAffx.30645.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3279010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein
LOC_Os10g32850Os.10946.1.S1_at11/1110+16862955..16866271expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30645.1.S1_at--747--871Chr10:16841777..16841801 (25 bp)
ATGGCGCTCGAGTGCGGAGCTCTCA
LOC_Os10g32790
OsAffx.30645.1.S1_at--935--7191Chr10:16841669..16841693 (25 bp)
GTCGGGCTGCTTGAAGACTCATACG
LOC_Os10g32790
OsAffx.30645.1.S1_at--392--5711Chr10:16841654..16841678 (25 bp)
GACTCATACGGCGATGGCAGTGATG
LOC_Os10g32790
OsAffx.30645.1.S1_at--69--1171Chr10:16841556..16841580 (25 bp)
AGTCAAATCACTCCTAATCCTGGTC
LOC_Os10g32790
OsAffx.30645.1.S1_at--357--5231Chr10:16841508..16841532 (25 bp)
GAATAGCCGAGTGTTTCAAAGCATC
LOC_Os10g32790
OsAffx.30645.1.S1_at--155--9371Chr10:16841485..16841509 (25 bp)
TCGAGACAACACCATGCGGAATCAT
LOC_Os10g32790
OsAffx.30645.1.S1_at--912--4671Chr10:16841470..16841494 (25 bp)
GCGGAATCATCGATCGGGCGACTGA
LOC_Os10g32790
OsAffx.30645.1.S1_at--150--3871Chr10:16841449..16841473 (25 bp)
CTGAGGAAATCTGGCTCTGGCGAGC
LOC_Os10g32790
OsAffx.30645.1.S1_at--406--5831NONE
GACCGTGGACGAATCAGATGTCTTT
NONE
OsAffx.30645.1.S1_at--88--1451Chr10:16839935..16839959 (25 bp)
AGAAGACTCCCGCAATGATCACGAT
LOC_Os10g32790
OsAffx.30645.1.S1_at--170--6451Chr10:16839919..16839943 (25 bp)
GATCACGATCGATCATTCCGTTTTG
LOC_Os10g32790
Target Sequence 
ATGGCGCTCGAGTGCGGAGCTCTCACCGCTGGCCACCCCGACGCCGACCGCCTCGTCCGCGCCTGGCTCGCCGTATCCCG
CCGCCGCCATGCACTCGTCCGCAGGCTCGTCGGGCTGCTTGAAGACTCATACGGCGATGGCAGTGATGGAGACGGCTCGT
CGTGGCCGTGGAACCGCGCGGCTCATCGTCACTGTCCTCTCGGTGTCGAGAAAAGAAGGAGAGTCAAATCACTCCTAATC
CTGGTCTCCTGGGAAATCTGGAAGGAGAGGAATAGCCGAGTGTTTCAAAGCATCGAGACAACACCATGCGGAATCATCGA
TCGGGCGACTGAGGAAATCTGGCTCTGGCGAGCTGGCGGGGCAGAGAGCATTCAATCTTTAATGCCAGATGACCGTGGAC
GAATCAGATGTCTTTACTATGATTATATGGGCATTAGAATTGTGCATCTCAGTAAGGAGAACTTTTGTGGGCGCGAGATG
GAGTTGGAGAAGATGACTTGCGGAGAAGACTCCCGCAATGATCACGATCGATCATTCCGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis