Browse Element(s) Details


OsAffx.30651.1.S1_at

Description tigr:9638.m02918
TID=OsAffx.30651.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3339011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33350Os.2580.1.S1_at11/1110+17215351..17218290expressed protein
LOC_Os10g33360NANA10+17218571..17218870hypothetical protein
LOC_Os10g33370Os.10251.1.S1_at11/1110+17234777..17242065beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os10g33390OsAffx.30651.1.S1_at11/1110+17242773..17244371hypothetical protein
LOC_Os10g33380NANA10+17245001..17246559transposon protein, putative, unclassified
LOC_Os10g33400OsAffx.8028.1.S1_x_at11/1110+17248667..17249263hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_x_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410Os.54461.1.S1_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_x_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_at6/1110+17251633..17252798hypothetical protein
LOC_Os10g33420Os.22652.2.S1_x_at11/1110+17255157..17263307expressed protein
LOC_Os10g33420Os.22652.1.S1_at11/1110+17255157..17263307expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30651.1.S1_at--368--9371Chr10:17243392..17243416 (25 bp)
TCGACGTCGAGGAACAGTAGCCCAT
LOC_Os10g33390
OsAffx.30651.1.S1_at--884--4051Chr10:17243385..17243409 (25 bp)
CGAGGAACAGTAGCCCATTCTGCCT
LOC_Os10g33390
OsAffx.30651.1.S1_at--517--111Chr10:17243369..17243393 (25 bp)
ATTCTGCCTACCTCGTCGGAGCCGG
LOC_Os10g33390
OsAffx.30651.1.S1_at--321--4491Chr10:17243349..17243373 (25 bp)
GCCGGAGTGGTGATGTCCCCGACTC
LOC_Os10g33390
OsAffx.30651.1.S1_at--500--2151Chr10:17243044..17243280 (25 bp)
ACACTCGGATCGAGTCGGTGGCGTC
LOC_Os10g33390
OsAffx.30651.1.S1_at--711--8552Chr12:21153637..21153664 (25 bp)
TGGAGTACTGCGTGGTCCAGATCGT
NONE
OsAffx.30651.1.S1_at--396--9251Chr10:17242981..17243005 (25 bp)
TCCTCAGGAGCATCTGCAGGTTGCA
LOC_Os10g33390
OsAffx.30651.1.S1_at--341--9052Chr08:9948577..9948601 (25 bp)
TGCAGGTTGCAGGAAGTCTTCGGCA
NONE
OsAffx.30651.1.S1_at--423--2852Chr11:8902109..8902133 (25 bp)
AAGTCTTCGGCATGGCGATGGAGCT
NONE
OsAffx.30651.1.S1_at--288--4291Chr10:17242891..17242915 (25 bp)
CCTCCTGTGCGTCGATGGAAGCCAA
LOC_Os10g33390
OsAffx.30651.1.S1_at--1143--6231Chr10:17242878..17242902 (25 bp)
GATGGAAGCCAAGGTCGCGTCCCAT
LOC_Os10g33390
Target Sequence 
TCGACGTCGAGGAACAGTAGCCCATTCTGCCTACCTCGTCGGAGCCGGAGTGGTGATGTCCCCGACTCCCCGTGTCGTCC
CCGCGCCGTCCGTGGCGGCATCCTCCCCCACCAGAAGCACCTGCGCTTCCAGCGCCACACTCGGATCGAGTCGGTGGCGT
CCATGGAGTACTGCGTGGTCCAGATCGTGATGCAGGTGGTCCTCAGGAGCATCTGCAGGTTGCAGGAAGTCTTCGGCATG
GCGATGGAGCTCGGCCACATCAAGGACGACGACGACAACGTCCGGCCGCCCTCCTGTGCGTCGATGGAAGCCAAGGTCGC
GTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis