Browse Element(s) Details


OsAffx.3075.1.S1_at

Description tigr:9630.m05436
TID=OsAffx.3075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5481010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54780Os.49865.1.S1_at11/112+33541427..33544549Protein CYPRO4, putative, expressed
LOC_Os02g54790Os.49661.1.S1_at8/112+33546302..33550653hypothetical protein
LOC_Os02g54800NANA2+33556054..33556542hypothetical protein
LOC_Os02g54810OsAffx.3075.1.S1_at10/112+33558559..33559082hypothetical protein
LOC_Os02g54820Os.12391.1.S1_a_at11/112+33563488..33568249trehalose-6-phosphate synthase, putative, expressed
LOC_Os02g54830Os.16077.1.S1_at10/112+33573629..33575366Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g54840OsAffx.12644.1.S1_at11/112+33577808..33578651hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3075.1.S1_at--1010--4431Chr02:33558605..33558629 (25 bp)
GCCTCAATTCAAAGCCGCCGGTTGG
LOC_Os02g54810
OsAffx.3075.1.S1_at--154--1911Chr02:33558714..33558738 (25 bp)
ACGTGAGCTTCCACGTTACGTGGCA
LOC_Os02g54810
OsAffx.3075.1.S1_at--1138--3331Chr02:33558725..33558749 (25 bp)
CACGTTACGTGGCAGATTTTGGTTG
LOC_Os02g54810
OsAffx.3075.1.S1_at--893--7571Chr02:33558750..33558774 (25 bp)
GGGCTTAAGCCTGGACGCCACGGCA
LOC_Os02g54810
OsAffx.3075.1.S1_at--810--1151Chr02:33558782..33558806 (25 bp)
AGTCTATCGGCTTATCCTGTCGTGG
LOC_Os02g54810
OsAffx.3075.1.S1_at--344--7791Chr02:33558823..33558847 (25 bp)
GGTCCTACGGTGTGTGCTGGCCTTA
LOC_Os02g54810
OsAffx.3075.1.S1_at--637--4711Chr02:33558838..33558862 (25 bp)
GCTGGCCTTACAGCTGTGGAGCTGA
LOC_Os02g54810
OsAffx.3075.1.S1_at--442--1611Chr02:33558857..33558881 (25 bp)
AGCTGAGCCGGCAACGCGGTCACAG
LOC_Os02g54810
OsAffx.3075.1.S1_at--736--1891Chr02:33558890..33558914 (25 bp)
ACGTCTCTGTGTTATTTCTCACGGG
LOC_Os02g54810
OsAffx.3075.1.S1_at--861--7691Chr02:33558913..33558937 (25 bp)
GGGTCTACAGCTGGTCAGGATTACT
LOC_Os02g54810
OsAffx.3075.1.S1_at--49--7131NONE
GTCAGGATTACTGTCCCCAAAGGAA
NONE
Target Sequence 
GCCTCAATTCAAAGCCGCCGGTTGGCGACGGCGGCGAGGCGCGGGGAGCTCTCAGCTTTGGCAAGGTCGGCAAGGCGCCG
CCGCCTGGGCCCTGCAGTGCTGGCTGCCCACGTGAGCTTCCACGTTACGTGGCAGATTTTGGTTGGGGCTTAAGCCTGGA
CGCCACGGCACCGGGGCAGTCTATCGGCTTATCCTGTCGTGGCTGGCCGCCACGTGCCGGTCCTACGGTGTGTGCTGGCC
TTACAGCTGTGGAGCTGAGCCGGCAACGCGGTCACAGCTCTTCGCACGTCTCTGTGTTATTTCTCACGGGGTCTACAGCT
GGTCAGGATTACTGTCCCCAAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis