Browse Element(s) Details


OsAffx.12644.1.S1_at

Description tigr:9630.m05441
TID=OsAffx.12644.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5484011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54800NANA2+33556054..33556542hypothetical protein
LOC_Os02g54810OsAffx.3075.1.S1_at10/112+33558559..33559082hypothetical protein
LOC_Os02g54820Os.12391.1.S1_a_at11/112+33563488..33568249trehalose-6-phosphate synthase, putative, expressed
LOC_Os02g54830Os.16077.1.S1_at10/112+33573629..33575366Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g54840OsAffx.12644.1.S1_at11/112+33577808..33578651hypothetical protein
LOC_Os02g54850NANA2+33584749..33586550hypothetical protein
LOC_Os02g54860Os.47766.1.S1_at11/112+33589908..33593589zinc finger family protein, putative, expressed
LOC_Os02g54870OsAffx.12645.1.S1_at11/112+33599010..33600115expressed protein
LOC_Os02g54870OsAffx.12645.1.S1_s_at11/112+33599010..33600115expressed protein
LOC_Os02g54880Os.51432.1.S1_at4/112+33602165..33604549Cytochrome c oxidase subunit, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12644.1.S1_at--397--1151Chr02:33578587..33578611 (25 bp)
AGTCTGCACTGCGTTTGGTCATGCA
LOC_Os02g54840
OsAffx.12644.1.S1_at--342--10251Chr02:33578574..33578598 (25 bp)
TTTGGTCATGCATCCACTCATCATG
LOC_Os02g54840
OsAffx.12644.1.S1_at--249--5831Chr02:33578233..33578257 (25 bp)
GACCGTGAATTCTGGGTTGGACCAT
LOC_Os02g54840
OsAffx.12644.1.S1_at--162--6611Chr02:33578218..33578242 (25 bp)
GTTGGACCATGCGTTGACTTACCAG
LOC_Os02g54840
OsAffx.12644.1.S1_at--81--1111Chr02:33578195..33578219 (25 bp)
AGTGGTCAGCACTCCTCAGAGAGAG
LOC_Os02g54840
OsAffx.12644.1.S1_at--107--5571Chr02:33578153..33578177 (25 bp)
GAAAGCTTTGGCATCGCATGCACAA
LOC_Os02g54840
OsAffx.12644.1.S1_at--55--6451Chr02:33578119..33578143 (25 bp)
GATCACCATGCACTTGCAAGCTTTG
LOC_Os02g54840
OsAffx.12644.1.S1_at--664--10731Chr02:33578077..33578101 (25 bp)
TTGCAGCCTGTTTTTATGTCCTTTT
LOC_Os02g54840
OsAffx.12644.1.S1_at--566--9071Chr02:33578013..33578037 (25 bp)
TGCTTCGCCAAAAGCCTTCTGGAAA
LOC_Os02g54840
OsAffx.12644.1.S1_at--494--9991Chr02:33577928..33577952 (25 bp)
TAGCCATCACGATCACGAGCAGCAT
LOC_Os02g54840
OsAffx.12644.1.S1_at--1149--3071Chr02:33577879..33577903 (25 bp)
AATAATCTGTGCCTCGTGATTCGCG
LOC_Os02g54840
Target Sequence 
AGTCTGCACTGCGTTTGGTCATGCATCCACTCATCATGCATCCACGGATCAACCAATGCAAATTTGACCGTGAATTCTGG
GTTGGACCATGCGTTGACTTACCAGTGGTCAGCACTCCTCAGAGAGAGGATCACAAGAGCAGAGAGAAAGCTTTGGCATC
GCATGCACAAATTGCAGCAGATCACCATGCACTTGCAAGCTTTGCATTGCAGGTTGCAGATTTGCAGCCTGTTTTTATGT
CCTTTTGCATGGACAAGGAATTAATGGAGGGCACTTTTGGGAACCTGCTTCGCCAAAAGCCTTCTGGAAACTGGCAAAAG
TCAAATTCACCTCCTACCGTCGAGTACTACAGTAGAAATCCTCATCAAAATAGCCATCACGATCACGAGCAGCATGGAGT
ACTGAAGTATCTGGATCTGAATAATCTGTGCCTCGTGATTCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis