Browse Element(s) Details


OsAffx.12645.1.S1_s_at

Description tigr:9630.m05446
TID=OsAffx.12645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5487011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54830Os.16077.1.S1_at10/112+33573629..33575366Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g54840OsAffx.12644.1.S1_at11/112+33577808..33578651hypothetical protein
LOC_Os02g54850NANA2+33584749..33586550hypothetical protein
LOC_Os02g54860Os.47766.1.S1_at11/112+33589908..33593589zinc finger family protein, putative, expressed
LOC_Os02g54870OsAffx.12645.1.S1_at11/112+33599010..33600115expressed protein
LOC_Os02g54870OsAffx.12645.1.S1_s_at11/112+33599010..33600115expressed protein
LOC_Os02g54880Os.51432.1.S1_at4/112+33602165..33604549Cytochrome c oxidase subunit, putative
LOC_Os02g54890Os.8158.1.S1_at11/112+33612432..33614461NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed
LOC_Os02g54910Os.15967.1.S1_at11/112+33623704..33627745transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12645.1.S1_s_at--815--1071Chr02:33599454..33599478 (25 bp)
AGGGCGAGCGTGCTGAAAGAGATCG
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--240--8971Chr02:33599467..33599491 (25 bp)
TGAAAGAGATCGTGCCGGGAGGGAA
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--780--2691Chr02:33599491..33599515 (25 bp)
AAGCTCTCGACATGTGCGCGTTGCT
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--681--3771Chr02:33599494..33599518 (25 bp)
CTCTCGACATGTGCGCGTTGCTGGG
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--751--7611Chr02:33599518..33599542 (25 bp)
GGGAAACCCTAGACTATGCCGTGTC
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--33--10031Chr02:33599527..33599551 (25 bp)
TAGACTATGCCGTGTCTCTGAAAGC
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--793--3691Chr02:33599531..33599555 (25 bp)
CTATGCCGTGTCTCTGAAAGCTCAG
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--656--3851Chr02:33599544..33599568 (25 bp)
CTGAAAGCTCAGGTCGATGTAATGC
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--34--9651Chr02:33599552..33599576 (25 bp)
TCAGGTCGATGTAATGCAGCTTCTT
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--586--3011Chr02:33599564..33599588 (25 bp)
AATGCAGCTTCTTGTGAGGACTCTC
LOC_Os02g54870
OsAffx.12645.1.S1_s_at--184--5071Chr02:33599567..33599591 (25 bp)
GCAGCTTCTTGTGAGGACTCTCCAA
LOC_Os02g54870
Target Sequence 
AGGGCGAGCGTGCTGAAAGAGATCGTGCCGGGAGGGAAAGCTCTCGACATGTGCGCGTTGCTGGGGGAAACCCTAGACTA
TGCCGTGTCTCTGAAAGCTCAGGTCGATGTAATGCAGCTTCTTGTGAGGACTCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12645.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis