Browse Element(s) Details


Os.51432.1.S1_at

Description gb:AK062787.1
DB_XREF= gi:32972805
TID=Os.51432.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B10, full insert sequence.
FL= gb:AK062787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g548804/11Cytochrome c oxidase subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54840OsAffx.12644.1.S1_at11/112+33577808..33578651hypothetical protein
LOC_Os02g54850NANA2+33584749..33586550hypothetical protein
LOC_Os02g54860Os.47766.1.S1_at11/112+33589908..33593589zinc finger family protein, putative, expressed
LOC_Os02g54870OsAffx.12645.1.S1_at11/112+33599010..33600115expressed protein
LOC_Os02g54870OsAffx.12645.1.S1_s_at11/112+33599010..33600115expressed protein
LOC_Os02g54880Os.51432.1.S1_at4/112+33602165..33604549Cytochrome c oxidase subunit, putative
LOC_Os02g54890Os.8158.1.S1_at11/112+33612432..33614461NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed
LOC_Os02g54910Os.15967.1.S1_at11/112+33623704..33627745transport protein, putative, expressed
LOC_Os02g54920Os.56117.1.S1_at11/112+33629089..33629613expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0004129molecular_functioncytochrome-c oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51432.1.S1_at--74--5991Chr02:33603453..33603477 (25 bp)
GAGACTGGAGGTTCCCGTCGGCCAA
LOC_Os02g54880
Os.51432.1.S1_at--971--631Chr02:33603416..33603440 (25 bp)
ATGCTTCACGTGCTACATCGAGTAC
LOC_Os02g54880
Os.51432.1.S1_at--479--5311Chr02:33603158..33603182 (25 bp)
GAAGGGTCCGACGAGTGCACCAAGT
LOC_Os02g54880
Os.51432.1.S1_at--538--1191Chr02:33603136..33603160 (25 bp)
AGTATGCCAAGTGCTACAGATCCCT
LOC_Os02g54880
Os.51432.1.S1_at--990--4031Chr02:33602125..33602149 (25 bp)
CGATCGATCGACCATATCTCTACAT
NONE
Os.51432.1.S1_at--902--9391Chr02:33602052..33602076 (25 bp)
TCGTCTCGATCGTCAGGGTGAAGCC
NONE
Os.51432.1.S1_at--747--9871Chr02:33601912..33601936 (25 bp)
TACAGTGCCGTGACAAGCTACTCTG
NONE
Os.51432.1.S1_at--1157--10411Chr02:33601881..33601905 (25 bp)
TTAGATAGTACGCTAGCTGCACCCG
NONE
Os.51432.1.S1_at--356--4731Chr02:33601866..33601890 (25 bp)
GCTGCACCCGTCATAAATTTGGTTG
NONE
Os.51432.1.S1_at--704--9071Chr02:33601821..33601845 (25 bp)
TGCTTCCATGTTGCTCTACTACTAG
NONE
Os.51432.1.S1_at--1081--3131Chr02:33601777..33601801 (25 bp)
AATTAGCTACTCACAGGTCGATCAG
NONE
Target Sequence 
GAGACTGGAGGTTCCCGTCGGCCAACCAGACCAAGCGATGCTTCACGTGCTACATCGAGTACAACAAGTGCATAGAAGCC
AAGGGTGAAGGGTCCGACGAGTGCACCAAGTATGCCAAGTGCTACAGATCCCTCTGCCCCGGGGAATGGATCGAGAGGTG
GAAGGAGCAGAGGGCAAACGGGACTTTCGCTGGGCCTCTCTGAAACGGGGACAGCGACCGATCGATCGACCATATCTCTA
CATATATCGATCGGCTACAGCTAATAATACCAATCAATCCTGTATGCAATGTCGTCTCGATCGTCAGGGTGAAGCCTCGT
CGTGACACTCCTAGCTAGTATTATGTACACTCATGACAGTGTCAGTTATTAATTGGTTGTTGTGTCTAATTGCAGTATTA
GTAGCGAACTAGCGATGCCCCTGCACTGCTGTACAGTGCCGTGACAAGCTACTCTGAATTTTTTAGATAGTACGCTAGCT
GCACCCGTCATAAATTTGGTTGTCTTTGGTTTCGGTTGGCTCTGCTTCCATGTTGCTCTACTACTAGTCTACTACTAATA
ATGGGTAATTAGCTACTCACAGGTCGATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis