Browse Element(s) Details


Os.47766.1.S1_at

Description gb:AK120632.1
DB_XREF= gi:37990255
TID=Os.47766.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153H21, full insert sequence.
FL= gb:AK120632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5486011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54820Os.12391.1.S1_a_at11/112+33563488..33568249trehalose-6-phosphate synthase, putative, expressed
LOC_Os02g54830Os.16077.1.S1_at10/112+33573629..33575366Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g54840OsAffx.12644.1.S1_at11/112+33577808..33578651hypothetical protein
LOC_Os02g54850NANA2+33584749..33586550hypothetical protein
LOC_Os02g54860Os.47766.1.S1_at11/112+33589908..33593589zinc finger family protein, putative, expressed
LOC_Os02g54870OsAffx.12645.1.S1_at11/112+33599010..33600115expressed protein
LOC_Os02g54870OsAffx.12645.1.S1_s_at11/112+33599010..33600115expressed protein
LOC_Os02g54880Os.51432.1.S1_at4/112+33602165..33604549Cytochrome c oxidase subunit, putative
LOC_Os02g54890Os.8158.1.S1_at11/112+33612432..33614461NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47766.1.S1_at--538--9011Chr02:33593112..33593136 (25 bp)
TGAATTCCAGTGTGCACGCATGCCA
LOC_Os02g54860
Os.47766.1.S1_at--739--6151Chr02:33593175..33593199 (25 bp)
GAGGTTGCCGGCGATGAAGCTTAAC
LOC_Os02g54860
Os.47766.1.S1_at--1069--5351Chr02:33593190..33593214 (25 bp)
GAAGCTTAACCCGTCGTTTTGTATG
LOC_Os02g54860
Os.47766.1.S1_at--24--6351Chr02:33593246..33593270 (25 bp)
GATGCTCAAGGTTCGGACCTAGCTT
LOC_Os02g54860
Os.47766.1.S1_at--876--871Chr02:33593310..33593334 (25 bp)
ATGGCCTCTAACCTTTGATCCAATT
LOC_Os02g54860
Os.47766.1.S1_at--160--3171Chr02:33593331..33593355 (25 bp)
AATTGCTGCCACTGGTAGCTGATAC
LOC_Os02g54860
Os.47766.1.S1_at--542--6511Chr02:33593358..33593382 (25 bp)
GATATTTCCTCAGTTTTGTGCCCAT
LOC_Os02g54860
Os.47766.1.S1_at--430--7291Chr02:33593375..33593399 (25 bp)
GTGCCCATTTTGAGGTTTACCATGT
LOC_Os02g54860
Os.47766.1.S1_at--719--31Chr02:33593415..33593439 (25 bp)
ATTGGTCTGGTTTTTGCCGATGTGA
LOC_Os02g54860
Os.47766.1.S1_at--501--6031Chr02:33593438..33593462 (25 bp)
GAGATGAACTTGCTGGTCCCAATTC
LOC_Os02g54860
Os.47766.1.S1_at--286--2012Chr02:33593489..33593513 (25 bp)
ACTACTCCTTTCTCTTGTCTGTAAA
LOC_Os02g54860
Target Sequence 
TGAATTCCAGTGTGCACGCATGCCACCTATGGGTTCATCCTCCTTCCGTTCCTTGAGCTGCCAGAGGTTGCCGGCGATGA
AGCTTAACCCGTCGTTTTGTATGGGTGCTATGGATACAAATCCCTGCCTAATAAGATGCTCAAGGTTCGGACCTAGCTTT
CGTCGGTCGGCTTCCCAAGGAGAAAGTAGCAGGAGAGCATGGCCTCTAACCTTTGATCCAATTGCTGCCACTGGTAGCTG
ATACCTGATATTTCCTCAGTTTTGTGCCCATTTTGAGGTTTACCATGTATATTCATTGGTTGCATTGGTCTGGTTTTTGC
CGATGTGAGATGAACTTGCTGGTCCCAATTCCTTGTTGATATCAGTAGCAGCATGTAACTACTCCTTTCTCTTGTCTGTA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis