Browse Element(s) Details


Os.16077.1.S1_at

Description gb:AK064699.1
DB_XREF= gi:32974717
TID=Os.16077.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G03, full insert sequence.
FL= gb:AK064699.1 gb:AK101056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5483010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54790Os.49661.1.S1_at8/112+33546302..33550653hypothetical protein
LOC_Os02g54800NANA2+33556054..33556542hypothetical protein
LOC_Os02g54810OsAffx.3075.1.S1_at10/112+33558559..33559082hypothetical protein
LOC_Os02g54820Os.12391.1.S1_a_at11/112+33563488..33568249trehalose-6-phosphate synthase, putative, expressed
LOC_Os02g54830Os.16077.1.S1_at10/112+33573629..33575366Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g54840OsAffx.12644.1.S1_at11/112+33577808..33578651hypothetical protein
LOC_Os02g54850NANA2+33584749..33586550hypothetical protein
LOC_Os02g54860Os.47766.1.S1_at11/112+33589908..33593589zinc finger family protein, putative, expressed
LOC_Os02g54870OsAffx.12645.1.S1_at11/112+33599010..33600115expressed protein
LOC_Os02g54870OsAffx.12645.1.S1_s_at11/112+33599010..33600115expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16077.1.S1_at--912--4591Chr02:33574152..33574176 (25 bp)
GCGAAGCTCGCCAAGGACAGCTTCT
LOC_Os02g54830
Os.16077.1.S1_at--320--1291Chr02:33574118..33574142 (25 bp)
AGATCTGGATGGTGCCGTCCAAGAA
LOC_Os02g54830
Os.16077.1.S1_at--1111--1571Chr02:33573917..33573941 (25 bp)
AGCTCAGCAGAGTCGGGAGCTGTTC
LOC_Os02g54830
Os.16077.1.S1_at--491--5891Chr02:33573901..33573925 (25 bp)
GAGCTGTTCATGATCACCATTTCGA
LOC_Os02g54830
Os.16077.1.S1_at--252--3791Chr02:33573811..33573835 (25 bp)
CTCCTTTTGCTTGCTAGGTTATTGG
LOC_Os02g54830
Os.16077.1.S1_at--1128--4571Chr02:33573784..33573808 (25 bp)
GCGAACTAGCGATTGCATCCAACAG
LOC_Os02g54830
Os.16077.1.S1_at--1017--8731Chr02:33573749..33573773 (25 bp)
TGTAAAACCCATATGCTACGAAGAG
LOC_Os02g54830
Os.16077.1.S1_at--953--10671Chr02:33573716..33573740 (25 bp)
TTCCTTTCATTTTTAACTGCATTTG
LOC_Os02g54830
Os.16077.1.S1_at--496--4951NONE
GCATTTGAGATTTTAAGTCCGGGTT
NONE
Os.16077.1.S1_at--879--1491Chr02:33573660..33573684 (25 bp)
AGCAAAGTGACTCCCTGATCATTAC
LOC_Os02g54830
Os.16077.1.S1_at--964--5711Chr02:33573652..33573676 (25 bp)
GACTCCCTGATCATTACTCGAAAGA
LOC_Os02g54830
Target Sequence 
GCGAAGCTCGCCAAGGACAGCTTCTCCGTGTCCAAGATCTGGATGGTGCCGTCCAAGAAAGAGCCCGGCGCCGCCGCCGA
GAGGCGCGCGGTGTCGTTCCGGTGGCCGGCGGCGAAGGACTGGGACGTCGAGGCCGGGAGCTGCGGCGGGAACAGCGCCG
TGTCGTCGGTGGCGGCGGAGGAGCGGCCGTCGTTCGCGAGGAGGACGCTGCTCTGGGTCGTCGGAGGCAGCAGGCAGCTC
AGCAGAGTCGGGAGCTGTTCATGATCACCATTTCGATCATCAAATCNCAAAATGAAACCAAAAAAAAAAAGATGATTCNT
TTGTTCAGTTCTTTTACCCCCTCCTTTTGCTTGCTAGGTTATTGGTAGCGAACTAGCGATTGCATCCAACAGCAAGAGAA
ATTGTAAAACCCATATGCTACGAAGAGAAGAAATTTTCCTTTCATTTTTAACTGCATTTGAGATTTTAAGTCCGGGTTGG
TTTCAATTTTCAGCAAAGTGACTCCCTGATCATTACTCGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis