Browse Element(s) Details


Os.49661.1.S1_at

Description gb:AK070029.1
DB_XREF= gi:32980053
TID=Os.49661.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038I03, full insert sequence.
FL= gb:AK070029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g547908/11hypothetical protein
LOC_Os02g489403/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54780Os.49865.1.S1_at11/112+33541427..33544549Protein CYPRO4, putative, expressed
LOC_Os02g54790Os.49661.1.S1_at8/112+33546302..33550653hypothetical protein
LOC_Os02g54800NANA2+33556054..33556542hypothetical protein
LOC_Os02g54810OsAffx.3075.1.S1_at10/112+33558559..33559082hypothetical protein
LOC_Os02g54820Os.12391.1.S1_a_at11/112+33563488..33568249trehalose-6-phosphate synthase, putative, expressed
LOC_Os02g54830Os.16077.1.S1_at10/112+33573629..33575366Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49661.1.S1_at--491--2132Chr02:33550350..33550374 (25 bp)
ACAGTGGGCAGGGTCTACATCAGAT
LOC_Os02g54790
Os.49661.1.S1_at--339--6711NONE
GTTCGAAGGTCATCAAGCAATTGTT
NONE
Os.49661.1.S1_at--625--52Chr02:33550395..33550419 (25 bp)
ATTGTTCTGGGATTCTGCCCAACAA
LOC_Os02g54790
Os.49661.1.S1_at--749--3271Chr02:33550414..33550438 (25 bp)
CAACAAGGCATTTCCCTGCAGGTAC
LOC_Os02g54790
Os.49661.1.S1_at--115--5291Chr02:33550514..33550538 (25 bp)
GAATGTCATGTACATGGCCTGCTGT
LOC_Os02g54790
Os.49661.1.S1_at--796--871Chr02:33550527..33550551 (25 bp)
ATGGCCTGCTGTGATGTCTTTCCAG
LOC_Os02g54790
Os.49661.1.S1_at--906--4353Chr02:33550631..33550655 (25 bp)
CCAGCAGCCAGGGTCATCGATGAAT
NONE
Os.49661.1.S1_at--1137--6314Chr02:33550649..33550673 (25 bp)
GATGAATCAATTACCAGAACGCCTC
NONE
Os.49661.1.S1_at--851--1432Chr02:33550664..33550688 (25 bp)
AGAACGCCTCAGACGATAGCTTCTT
NONE
Os.49661.1.S1_at--1132--9571Chr02:33550751..33550775 (25 bp)
TCTTGTCTGATCTCTCTTCTCAAAC
NONE
Os.49661.1.S1_at--536--10571Chr02:33550767..33550791 (25 bp)
TTCTCAAACTATACCTCTCTTTCTC
NONE
Target Sequence 
ACAGTGGGCAGGGTCTACATCAGATGGTTCGAAGGTCATCAAGCAATTGTTCTGGGATTCTGCCCAACAAGGCATTTCCC
TGCAGGTACCTTGGGATCTTGGGGGCATTAATCTGGCGAGTCAGTTGCATCGGCTTGGGGACAAGCCGATTCTTAACGGG
GGAAGAATGTCATGTACATGGCCTGCTGTGATGTCTTTCCAGGAGGCTAGACAAGTGGGCTGGCTTTGGGCCCATTCGGC
TAGGGAGAAGGAGACTAGAAAAGAGGCAAAGCAGCCAGCAGCCAGCAGCCAGGGTCATCGATGAATCAATTACCAGAACG
CCTCAGACGATAGCTTCTTCCTCCTCCTTGCTGCTGCTTCCCCTCTCAATTCCTACTCTCTAGTCCCAATCTCCTGCTTC
CTCTTGTCTGATCTCTCTTCTCAAACTATACCTCTCTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis