Browse Element(s) Details


OsAffx.3074.1.S1_at

Description tigr:9630.m05430
TID=OsAffx.3074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cyclic nucleotide and calmodulin-regulated ion channel protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5476011/11Cyclic nucleotide-gated ion channel 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54750NANA2+33520186..33520692retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54780Os.49865.1.S1_at11/112+33541427..33544549Protein CYPRO4, putative, expressed
LOC_Os02g54790Os.49661.1.S1_at8/112+33546302..33550653hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3074.1.S1_at--1086--7391Chr02:33525761..33525785 (25 bp)
GTGATCCAGTGACCGAGATGCTCTT
LOC_Os02g54760
OsAffx.3074.1.S1_at--393--8432Chr02:33525688..33525712 (25 bp)
TGGCTTCTTCAATTCAACTACCCTG
LOC_Os02g54760
OsAffx.3074.1.S1_at--1126--2271Chr02:33525663..33525687 (25 bp)
AAATCCGGTGATTTCTGCGGCGAGG
LOC_Os02g54760
OsAffx.3074.1.S1_at--5--5471Chr02:33525639..33525663 (25 bp)
GAACTGCTTGGGTGGGCTCTTGTCC
LOC_Os02g54760
OsAffx.3074.1.S1_at--708--9911Chr02:33525607..33525631 (25 bp)
TACTGTTAATTTGCCGTCATCCACT
LOC_Os02g54760
OsAffx.3074.1.S1_at--429--5351Chr02:33525561..33525585 (25 bp)
GAAGTTGAGGCATTCGCACTCCAAG
LOC_Os02g54760
OsAffx.3074.1.S1_at--475--8811Chr02:33525520..33525544 (25 bp)
TGTTGCAAACCAATTCAGGCGTCTG
LOC_Os02g54760
OsAffx.3074.1.S1_at--399--2811Chr02:33525487..33525511 (25 bp)
AAGATTGCAACACACTTTCCGGTAC
LOC_Os02g54760
OsAffx.3074.1.S1_at--851--5971Chr02:33525448..33525472 (25 bp)
GAGAACTTGGGCCTCATGCTTCATC
LOC_Os02g54760
OsAffx.3074.1.S1_at--898--8031Chr02:33525367..33525391 (25 bp)
GGAGTCATTCTGCTCCATGAGATCA
LOC_Os02g54760
OsAffx.3074.1.S1_at--345--1291Chr02:33525325..33525349 (25 bp)
AGATGACTCGCCACCTAAGCAGAAT
LOC_Os02g54760
Target Sequence 
GTGATCCAGTGACCGAGATGCTCTTCATCATTCGTGGGAAACTCGAAAGCTCTACAACAAATGGTGGCCGCACTGGCTTC
TTCAATTCAACTACCCTGAAATCCGGTGATTTCTGCGGCGAGGAACTGCTTGGGTGGGCTCTTGTCCCCAAACCTACTGT
TAATTTGCCGTCATCCACTCGGACAGTGAAGGCACTCATAGAAGTTGAGGCATTCGCACTCCAAGCTGAGGATCTCAAGT
TTGTTGCAAACCAATTCAGGCGTCTGCACAGCAAAAGATTGCAACACACTTTCCGGTACTACTCGCACCACTGGAGAACT
TGGGCCTCATGCTTCATCCAAGCTGCTTGGCGGCGATACAAGAGGAGGAAGATGGCAAGGGACCTGAGCATGAGGGAGTC
ATTCTGCTCCATGAGATCAGATGACTCAAATGGTGAAGATGACTCGCCACCTAAGCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis