Browse Element(s) Details


Os.10910.1.A1_at

Description gb:CR280795
DB_XREF= gi:44667361
DB_XREF=CR280795
CLONE=y722a03p3
TID=Os.10910.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10910 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5476011/11Cyclic nucleotide-gated ion channel 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54750NANA2+33520186..33520692retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54780Os.49865.1.S1_at11/112+33541427..33544549Protein CYPRO4, putative, expressed
LOC_Os02g54790Os.49661.1.S1_at8/112+33546302..33550653hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10910.1.A1_at--1137--6751Chr02:33525142..33525166 (25 bp)
GTTAACCATTGCTATACTACCATAT
LOC_Os02g54760
Os.10910.1.A1_at--473--4871Chr02:33525132..33525156 (25 bp)
GCTATACTACCATATACTGTTGGAT
LOC_Os02g54760
Os.10910.1.A1_at--359--231Chr02:33525121..33525145 (25 bp)
ATATACTGTTGGATCGACGGCACGA
LOC_Os02g54760
Os.10910.1.A1_at--233--7971Chr02:33525111..33525135 (25 bp)
GGATCGACGGCACGAGTTGTCCAAT
LOC_Os02g54760
Os.10910.1.A1_at--685--1931Chr02:33525105..33525129 (25 bp)
ACGGCACGAGTTGTCCAATTGTTGA
LOC_Os02g54760
Os.10910.1.A1_at--645--2031Chr02:33525003..33525027 (25 bp)
ACTAGATGTTTTAGGCGTTGGCAAC
LOC_Os02g54760
Os.10910.1.A1_at--888--8371Chr02:33524990..33525014 (25 bp)
GGCGTTGGCAACTTGTACATCCAGA
LOC_Os02g54760
Os.10910.1.A1_at--183--8511Chr02:33524985..33525009 (25 bp)
TGGCAACTTGTACATCCAGATATAC
LOC_Os02g54760
Os.10910.1.A1_at--734--10751Chr02:33524939..33524963 (25 bp)
TTGAGATCTTAGAAACGGCCGCACC
LOC_Os02g54760
Os.10910.1.A1_at--47--1271Chr02:33524936..33524960 (25 bp)
AGATCTTAGAAACGGCCGCACCCTT
LOC_Os02g54760
Os.10910.1.A1_at--231--6451Chr02:33524870..33524894 (25 bp)
GATCAAACGTAAAGGCAGTCTGTAT
LOC_Os02g54760
Target Sequence 
GTTAACCATTGCTATACTACCATATACTGTTGGATCGACGGCACGAGTTGTCCAATTGTTGATGAGAAAGTTCATTAACT
TGGAAACTAANAAACATGGAGAAGCAGCGAATTCNCGAAGGGATCGAGGCTTTGAGTTGACTAGATGTTTTAGGCGTTGG
CAACTTGTACATCCAGATATACNCGTCTGTGCTTGTAACATTCTTGAGATCTTAGAAACGGCCGCACCCTTACATTTGAC
TGCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCAAACGTAAAGGCAGTCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10910.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis