Browse Element(s) Details


OsAffx.12646.1.S1_at

Description tigr:9630.m05450
TID=OsAffx.12646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein kinase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5490010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54860Os.47766.1.S1_at11/112+33589908..33593589zinc finger family protein, putative, expressed
LOC_Os02g54870OsAffx.12645.1.S1_at11/112+33599010..33600115expressed protein
LOC_Os02g54870OsAffx.12645.1.S1_s_at11/112+33599010..33600115expressed protein
LOC_Os02g54880Os.51432.1.S1_at4/112+33602165..33604549Cytochrome c oxidase subunit, putative
LOC_Os02g54890Os.8158.1.S1_at11/112+33612432..33614461NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed
LOC_Os02g54910Os.15967.1.S1_at11/112+33623704..33627745transport protein, putative, expressed
LOC_Os02g54920Os.56117.1.S1_at11/112+33629089..33629613expressed protein
LOC_Os02g54930OsAffx.12647.1.S1_at11/112+33635603..33638439expressed protein
LOC_Os02g54940OsAffx.24872.1.S1_at11/112+33644810..33645488hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12646.1.S1_at--16--6771Chr02:33622429..33622453 (25 bp)
GTTAAGTATACCATCCTCAATTGAG
LOC_Os02g54900
OsAffx.12646.1.S1_at--527--9711Chr02:33622460..33622484 (25 bp)
TCAACCATTATTGGTGGGTCCCTTT
LOC_Os02g54900
OsAffx.12646.1.S1_at--378--7711Chr02:33622475..33622499 (25 bp)
GGGTCCCTTTATATGCAGCTGTACA
LOC_Os02g54900
OsAffx.12646.1.S1_at--890--271Chr02:33622662..33622686 (25 bp)
ATATGGCAATGACGTCACCTGCCTG
LOC_Os02g54900
OsAffx.12646.1.S1_at--725--6431Chr02:33622740..33622975 (25 bp)
GATCATTGTTGGAAGCGGCACACGA
LOC_Os02g54900
OsAffx.12646.1.S1_at--478--5131NONE
GCAAAGGCAGCCCAGTTACTATCTA
NONE
OsAffx.12646.1.S1_at--718--651Chr02:33623851..33623875 (25 bp)
ATGAATCATCCCTCACCATTGGTGG
LOC_Os02g54900
OsAffx.12646.1.S1_at--818--6051Chr02:33623904..33623928 (25 bp)
GAGTTAGAATCTCAGCCCAAACCAC
LOC_Os02g54900
OsAffx.12646.1.S1_at--774--1571Chr02:33623975..33623999 (25 bp)
AGCTGAAGCTTCTGTCATTGGTGAG
LOC_Os02g54900
OsAffx.12646.1.S1_at--766--31Chr02:33623991..33624015 (25 bp)
ATTGGTGAGCCAACTAGTCTGCTAG
LOC_Os02g54900
OsAffx.12646.1.S1_at--1001--1151Chr02:33624006..33624030 (25 bp)
AGTCTGCTAGTCAGTCCTTGTGTTG
LOC_Os02g54900
Target Sequence 
GTTAAGTATACCATCCTCAATTGAGGCTGCATCAACCATTATTGGTGGGTCCCTTTATATGCAGCTGTACAATGTTCTAC
AGACAAATATGCTTCAGAGGGAGCAAATACTTCATGCGATGAAACAGTTAAGTGGTTGCGATATGGCAATGACGTCACCT
GCCTGCATTGCTCCTGCAAGTCGCGCATCATCTCCATCATCAGCATTATCAATTGACAGATCATTGTTGGAAGCGGCACA
CGAAAAGGAGAAGGAGCTGGTCAATGAGATCACTGAGCTGCAATGGCGGTTAGTGTGTTCGCAGGACGAGATACAGAGGC
TCAAAGCAAAGGCAGCCCAGTTACTATCTATAATTTACATCCACAAGAAGGATGAATCATCCCTCACCATTGGTGGGCAC
ATCTATGATACACTTGTCCAATTGGAGTTAGAATCTCAGCCCAAACCACAGACCAGCCCTACCAGCACACTATCTTACAA
ATTGTATGTACACACAGCTGAAGCTTCTGTCATTGGTGAGCCAACTAGTCTGCTAGTCAGTCCTTGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis