Browse Element(s) Details


Os.8158.1.S1_at

Description gb:AK069596.1
DB_XREF= gi:32979620
TID=Os.8158.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023103L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024B07, full insert sequence.
FL= gb:AK071654.1 gb:AK069596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5489011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54860Os.47766.1.S1_at11/112+33589908..33593589zinc finger family protein, putative, expressed
LOC_Os02g54870OsAffx.12645.1.S1_at11/112+33599010..33600115expressed protein
LOC_Os02g54870OsAffx.12645.1.S1_s_at11/112+33599010..33600115expressed protein
LOC_Os02g54880Os.51432.1.S1_at4/112+33602165..33604549Cytochrome c oxidase subunit, putative
LOC_Os02g54890Os.8158.1.S1_at11/112+33612432..33614461NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed
LOC_Os02g54910Os.15967.1.S1_at11/112+33623704..33627745transport protein, putative, expressed
LOC_Os02g54920Os.56117.1.S1_at11/112+33629089..33629613expressed protein
LOC_Os02g54930OsAffx.12647.1.S1_at11/112+33635603..33638439expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0050378molecular_functionUDP-glucuronate 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8158.1.S1_at--186--2751Chr02:33613880..33613904 (25 bp)
AAGAAGAACGTGGTCGAGATGCCCG
LOC_Os02g54890
Os.8158.1.S1_at--990--4371Chr02:33613977..33614001 (25 bp)
CCAACCTCGACGTCGGGCTCAAGAA
LOC_Os02g54890
Os.8158.1.S1_at--672--5471Chr02:33614050..33614074 (25 bp)
GAACTTGTGACTATAATCCGCCCTA
LOC_Os02g54890
Os.8158.1.S1_at--552--531Chr02:33614065..33614089 (25 bp)
ATCCGCCCTAATTCTTCTGCTAATT
LOC_Os02g54890
Os.8158.1.S1_at--128--10371Chr02:33614111..33614135 (25 bp)
TTTTTCTTCTTATTCTCTGGCCATC
LOC_Os02g54890
Os.8158.1.S1_at--1005--9451Chr02:33614126..33614150 (25 bp)
TCTGGCCATCCAGTGGTCGATTCCA
LOC_Os02g54890
Os.8158.1.S1_at--768--3451Chr02:33614136..33614160 (25 bp)
CAGTGGTCGATTCCACTCCAGGATC
LOC_Os02g54890
Os.8158.1.S1_at--736--10371Chr02:33614367..33614391 (25 bp)
TTTTTTGTGTGTAATCTGGCTGGTC
LOC_Os02g54890
Os.8158.1.S1_at--688--3051Chr02:33614379..33614403 (25 bp)
AATCTGGCTGGTCATAGCTGAGCTA
LOC_Os02g54890
Os.8158.1.S1_at--120--311Chr02:33614392..33614416 (25 bp)
ATAGCTGAGCTATGAATCTTTCTTG
LOC_Os02g54890
Os.8158.1.S1_at--740--5231Chr02:33614405..33614429 (25 bp)
GAATCTTTCTTGAGCTAAACTAATC
LOC_Os02g54890
Target Sequence 
AAGAAGAACGTGGTCGAGATGCCCGGCAATGGCGACGTGCCATTCACGCACGCCAACATCTCCCTCGCGAGGCAGCAGCT
CGGCTACAAGCCGACCACCAACCTCGACGTCGGGCTCAAGAAGTTCGTCAAGTGGTACCTCTCCTACTACGGCTACACCA
GGGGATCCAAGAACTTGTGACTATAATCCGCCCTAATTCTTCTGCTAATTCTTTTCTTTTTCTTTCTTCTTTTTTTCTTC
TTATTCTCTGGCCATCCAGTGGTCGATTCCACTCCAGGATCAAAACATTAACATTCTTATTTCGACTTTTTTTTTGGGGG
AAATATTTTAGGATGTTCTTTGGAATACTGGGGGGAATTCTTTTCTTGGGGGAGGGGAGGGAGGAAGAAGAAAGCAATGG
AGAGCAGCATTTTTCTCTTCCTTTTCCCTTTATCTTCTCCATGCTCTTCTGTAAATTTCGTTCTCCATAACGTTTCACAC
CCTCGAATTTTTTGTGTGTAATCTGGCTGGTCATAGCTGAGCTATGAATCTTTCTTGAGCTAAACTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis