Browse Element(s) Details


Os.56117.1.S1_at

Description gb:AK109282.1
DB_XREF= gi:32994491
TID=Os.56117.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B11, full insert sequence.
FL= gb:AK109282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5492011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54880Os.51432.1.S1_at4/112+33602165..33604549Cytochrome c oxidase subunit, putative
LOC_Os02g54890Os.8158.1.S1_at11/112+33612432..33614461NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed
LOC_Os02g54910Os.15967.1.S1_at11/112+33623704..33627745transport protein, putative, expressed
LOC_Os02g54920Os.56117.1.S1_at11/112+33629089..33629613expressed protein
LOC_Os02g54930OsAffx.12647.1.S1_at11/112+33635603..33638439expressed protein
LOC_Os02g54940OsAffx.24872.1.S1_at11/112+33644810..33645488hypothetical protein
LOC_Os02g54950OsAffx.29313.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54950Os.14919.1.S1_at1/112+33654555..33656116hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56117.1.S1_at--976--9251Chr02:33629138..33629162 (25 bp)
TCCTCGTCGGAGGTCAAACGGCGGA
LOC_Os02g54920
Os.56117.1.S1_at--288--991Chr02:33629235..33629259 (25 bp)
AGGATGAGGTCCAGGTTAACGCCCT
LOC_Os02g54920
Os.56117.1.S1_at--270--8311Chr02:33629264..33629288 (25 bp)
GGCTATCGCTGCTATTGCGGCCTTC
LOC_Os02g54920
Os.56117.1.S1_at--285--5331Chr02:33629300..33629324 (25 bp)
GAAGTCGAAGCCCACGCAATCCGTC
LOC_Os02g54920
Os.56117.1.S1_at--914--1831Chr02:33629313..33629337 (25 bp)
ACGCAATCCGTCGTTAGTGGGCACT
LOC_Os02g54920
Os.56117.1.S1_at--988--7471Chr02:33629329..33629353 (25 bp)
GTGGGCACTCCAGTCTGAATGACCC
LOC_Os02g54920
Os.56117.1.S1_at--638--8991Chr02:33629344..33629368 (25 bp)
TGAATGACCCCAGTTCGGCGGACGG
LOC_Os02g54920
Os.56117.1.S1_at--82--7311Chr02:33629381..33629405 (25 bp)
GTGCTTGCGCTTGTTCCGGTTGGCT
LOC_Os02g54920
Os.56117.1.S1_at--675--8571Chr02:33629413..33629437 (25 bp)
TGGTTACCTTCTCAAGTTCTCATGC
LOC_Os02g54920
Os.56117.1.S1_at--793--9031Chr02:33629472..33629496 (25 bp)
TGCAGCGTCGCGAGAGTATGCTTGC
LOC_Os02g54920
Os.56117.1.S1_at--1007--8751Chr02:33629519..33629543 (25 bp)
TGACGTGGGTAGTGTTTAGTTCCTC
LOC_Os02g54920
Target Sequence 
TCCTCGTCGGAGGTCAAACGGCGGAGGGGATGGATGACATTGCCGGAGCCGGAGAAGAGCCAGCGGATGGACGACGAGGG
CTGGACTGAGGAGGAGGAGGATGAGGTCCAGGTTAACGCCCTCGGCGGCTATCGCTGCTATTGCGGCCTTCTCCGGCGAC
ATGAAGTCGAAGCCCACGCAATCCGTCGTTAGTGGGCACTCCAGTCTGAATGACCCCAGTTCGGCGGACGGCGGCTCGGC
ACGGTGCTTGCGCTTGTTCCGGTTGGCTGGCTGGCTGGTTACCTTCTCAAGTTCTCATGCACTGCCGCTGACCCCAACAG
TGACGGCGCGCGGCTGCAGCGTCGCGAGAGTATGCTTGCTTTTCTTTTTCTTTTTTTTTTTTGACGTGGGTAGTGTTTAG
TTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis