Browse Element(s) Details


Os.15967.1.S1_at

Description gb:AY445625.1
DB_XREF= gi:38374123
TID=Os.15967.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) putative protein mRNA, complete cds.
FL= gb:AK099697.1 gb:AK066282.1 gb:AY445625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5491011/11transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54870OsAffx.12645.1.S1_at11/112+33599010..33600115expressed protein
LOC_Os02g54870OsAffx.12645.1.S1_s_at11/112+33599010..33600115expressed protein
LOC_Os02g54880Os.51432.1.S1_at4/112+33602165..33604549Cytochrome c oxidase subunit, putative
LOC_Os02g54890Os.8158.1.S1_at11/112+33612432..33614461NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed
LOC_Os02g54910Os.15967.1.S1_at11/112+33623704..33627745transport protein, putative, expressed
LOC_Os02g54920Os.56117.1.S1_at11/112+33629089..33629613expressed protein
LOC_Os02g54930OsAffx.12647.1.S1_at11/112+33635603..33638439expressed protein
LOC_Os02g54940OsAffx.24872.1.S1_at11/112+33644810..33645488hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0042594biological_processresponse to starvation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15967.1.S1_at--772--8871Chr02:33624124..33624148 (25 bp)
TGATGGATACTTCCGCGAGTACTCG
LOC_Os02g54910
Os.15967.1.S1_at--146--4051Chr02:33624109..33624133 (25 bp)
CGAGTACTCGATCAACACCACAAAG
LOC_Os02g54910
Os.15967.1.S1_at--228--8631Chr02:33624069..33624093 (25 bp)
TGGGTTTTGCAACGCGAGCTCAATC
LOC_Os02g54910
Os.15967.1.S1_at--181--5911Chr02:33624054..33624078 (25 bp)
GAGCTCAATCTACTGGATACCGGTT
LOC_Os02g54910
Os.15967.1.S1_at--857--3711Chr02:33623991..33624015 (25 bp)
CTAGCAGACTAGTTGGCTCACCAAT
LOC_Os02g54910
Os.15967.1.S1_at--637--5391Chr02:33623962..33623986 (25 bp)
GAAGCTTCAGCTGTGTGTACATACA
LOC_Os02g54910
Os.15967.1.S1_at--230--4751Chr02:33623895..33623919 (25 bp)
GCTGAGATTCTAACTCCAATTGGAC
LOC_Os02g54910
Os.15967.1.S1_at--553--1111Chr02:33623869..33623893 (25 bp)
AGTGTATCATAGATGTGCCCACCAA
LOC_Os02g54910
Os.15967.1.S1_at--598--7051Chr02:33623758..33623782 (25 bp)
GTAACTGCTTTGCTACACGACTGAC
LOC_Os02g54910
Os.15967.1.S1_at--165--2151Chr02:33623735..33623759 (25 bp)
ACAGACTTTGCCCTGAGTGGTTACA
LOC_Os02g54910
Os.15967.1.S1_at--157--671Chr02:33623705..33623729 (25 bp)
ATGAACCAGCATACTGCCATACTGA
LOC_Os02g54910
Target Sequence 
TGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATC
TACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGA
CAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCT
AACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTAT
AGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGC
CCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCATACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis