Browse Element(s) Details


OsAffx.3076.1.S1_s_at

Description tigr:9630.m05456
TID=OsAffx.3076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5496011/11carboxyl-terminal proteinase, putative, expressed
LOC_Os02g552301/11carboxyl-terminal peptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54930OsAffx.12647.1.S1_at11/112+33635603..33638439expressed protein
LOC_Os02g54940OsAffx.24872.1.S1_at11/112+33644810..33645488hypothetical protein
LOC_Os02g54950OsAffx.29313.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54950Os.14919.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54960OsAffx.3076.1.S1_s_at11/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54960OsAffx.3076.1.S1_at9/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54970OsAffx.12648.1.S1_at11/112+33667028..33669164hypothetical protein
LOC_Os02g54980Os.26549.1.S1_at11/112+33682481..33684617Rieske domain containing protein, expressed
LOC_Os02g54990Os.37836.1.S1_at11/112+33684922..33688265TMS membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3076.1.S1_s_at--720--7531Chr02:33661183..33661207 (25 bp)
GTGGCTAGCATATGGTTCAAATAAT
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--532--9851Chr02:33661207..33661231 (25 bp)
TACACCTATTGGATATTGGCCGAGT
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--666--10491Chr02:33661287..33661311 (25 bp)
TTCAAGGTCCAACAGCTTCTTCGGA
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--52--7051Chr02:33661306..33661330 (25 bp)
TTCGGACCCACCACAAATTGGTAGT
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--976--10071Chr02:33661327..33661351 (25 bp)
TAGTGGGCACTTCGCTTCTGAAGGA
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--847--10532Chr02:33661337..33661361 (25 bp)
TTCGCTTCTGAAGGATTTGGCAAAG
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--763--1471Chr02:33661360..33661384 (25 bp)
AGCAGCTTTTGTTAGGAATATTCAA
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--10--5971Chr02:33661397..33661421 (25 bp)
GAGAACAACAAGCTGGTTACCCCAA
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--844--8571Chr02:33661410..33661434 (25 bp)
TGGTTACCCCAAGCATCCGTAGTGC
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--105--5611Chr02:33661448..33661472 (25 bp)
GACAATCCAAAATTATACACCTATG
LOC_Os02g54960
OsAffx.3076.1.S1_s_at--842--9831Chr02:33661463..33661487 (25 bp)
TACACCTATGATGACTATGGACTTA
LOC_Os02g54960
Target Sequence 
GTGGCTAGCATATGGTTCAAATAATACACCTATTGGATATTGGCCGAGTTCACAATTTTCATCCATGAAGGACAAATGTA
ATTTTGCATTTTGGGGTGGATATGTTCAAGGTCCAACAGCTTCTTCGGACCCACCACAAATTGGTAGTGGGCACTTCGCT
TCTGAAGGATTTGGCAAAGCAGCTTTTGTTAGGAATATTCAAGCTATTGAAGATGAGAACAACAAGCTGGTTACCCCAAG
CATCCGTAGTGCCCATCCTCGAGACGACAATCCAAAATTATACACCTATGATGACTATGGACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3076.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis