Browse Element(s) Details


OsAffx.30855.1.S1_x_at

Description tigr:9639.m00651
TID=OsAffx.30855.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0714011/11Protein kinase domain containing protein, expressed
LOC_Os11g0713011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07090OsAffx.30852.1.S1_at11/1111+3528149..3529750Pectinesterase family protein, expressed
LOC_Os11g07100OsAffx.30853.1.S1_at11/1111+3531469..3532103hypothetical protein
LOC_Os11g07110OsAffx.18716.1.S1_at11/1111+3532785..3536087Leucine Rich Repeat family protein, expressed
LOC_Os11g07120OsAffx.18717.1.S1_at11/1111+3538103..3541241Leucine Rich Repeat family protein, expressed
LOC_Os11g07130OsAffx.30855.1.S1_at11/1111+3548108..3549835Protein kinase domain containing protein
LOC_Os11g07130OsAffx.30855.1.S1_x_at11/1111+3548108..3549835Protein kinase domain containing protein
LOC_Os11g07140OsAffx.30855.1.S1_x_at11/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07140OsAffx.30855.1.S1_at11/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07140OsAffx.18717.1.S1_at1/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07150NANA11+3559500..3561268retrotransposon protein, putative, unclassified
LOC_Os11g07160OsAffx.18718.1.S1_at11/1111+3561605..3564742Leucine Rich Repeat family protein
LOC_Os11g07170OsAffx.7030.1.S1_x_at11/1111+3576994..3580062Leucine Rich Repeat family protein, expressed
LOC_Os11g07170OsAffx.7030.1.S1_at11/1111+3576994..3580062Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30855.1.S1_x_at--357--3413Chr11:3627486..3627509 (24 bp)
CAGAATGCTCAGAGGGCGGTCAAGT
NONE
OsAffx.30855.1.S1_x_at--454--3753Chr11:3627492..3627516 (25 bp)
CTCAGAGGGCGGTCAAGTTTCAACT
NONE
OsAffx.30855.1.S1_x_at--246--1213Chr11:3627507..3627531 (25 bp)
AGTTTCAACTGCCTCAGATGTATTC
NONE
OsAffx.30855.1.S1_x_at--38--9193Chr11:3627516..3627540 (25 bp)
TGCCTCAGATGTATTCAGCTTTGGA
NONE
OsAffx.30855.1.S1_x_at--806--2712Chr11:3553534..3553558 (25 bp)
AAGCATGTAGAGATGAACTTCCCTG
LOC_Os11g07140
OsAffx.30855.1.S1_x_at--873--8752Chr11:3553539..3553563 (25 bp)
TGTAGAGATGAACTTCCCTGACAGG
LOC_Os11g07140
OsAffx.30855.1.S1_x_at--590--9313Chr11:3627632..3627656 (25 bp)
TCCCTGACAGGATACTAGAGATTGT
NONE
OsAffx.30855.1.S1_x_at--802--9012Chr11:3553589..3553613 (25 bp)
TGCAACACGAGCTGGACCTTTGCCA
LOC_Os11g07140
OsAffx.30855.1.S1_x_at--341--3352Chr11:3553594..3553618 (25 bp)
CACGAGCTGGACCTTTGCCAAGAAA
LOC_Os11g07140
OsAffx.30855.1.S1_x_at--973--8092Chr11:3553602..3553626 (25 bp)
GGACCTTTGCCAAGAAACACCAATG
LOC_Os11g07140
OsAffx.30855.1.S1_x_at--1089--5572Chr11:3553638..3553662 (25 bp)
GAAAGGCATACACTGCCTGCGCAGT
LOC_Os11g07140
Target Sequence 
CAGAATGCTCAGAGGGCGGTCAAGTTTCAACTGCCTCAGATGTATTCAGCTTTGGAGTTGTTCTCTTGGAANTATTTATT
CGGAGAAGGCCAANAGANGACATGTTTANGGATGGATTGAGCATTGCAAAGCATGTAGAGATGAACTTCCCTGACAGGAT
ACTAGAGATTGTTGATCCCCAGNTGCAACACGAGCTGGACCTTTGCCAAGAAACACCAATGGCAGTNAAGGAGAAAGGCA
TACACTGCCTGCGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30855.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis