Browse Element(s) Details


OsAffx.30890.1.S1_at

Description tigr:9639.m00813
TID=OsAffx.30890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0864010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08610Os.56258.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified
LOC_Os11g08610OsAffx.7914.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified
LOC_Os11g08620NANA11+4582384..4585255hypothetical protein
LOC_Os11g08630NANA11+4585475..4586054retrotransposon protein, putative, unclassified
LOC_Os11g08640OsAffx.30890.1.S1_at10/1111+4593412..4596946hypothetical protein
LOC_Os11g08640Os.7070.1.S1_at1/1111+4593412..4596946hypothetical protein
LOC_Os11g08650NANA11+4607926..4608477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08660Os.51060.2.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08660Os.51060.1.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08670Os.17282.1.S1_at10/1111+4621013..4627105ATP-NAD kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30890.1.S1_at--180--10291Chr11:4595005..4595029 (25 bp)
TTTGCTGTGATGGTTTCGGCGATAC
LOC_Os11g08640
OsAffx.30890.1.S1_at--388--5811Chr11:4595092..4595116 (25 bp)
GACGCCAGTTACGAAGAAGCATCTT
LOC_Os11g08640
OsAffx.30890.1.S1_at--723--2331Chr11:4595130..4595154 (25 bp)
AAAGATGGGCAGGTGCATTCTCCGG
LOC_Os11g08640
OsAffx.30890.1.S1_at--428--5351Chr11:4596038..4596062 (25 bp)
GAAGTTGATGAATTGCTACCTGCAA
LOC_Os11g08640
OsAffx.30890.1.S1_at--324--9971Chr11:4596054..4596078 (25 bp)
TACCTGCAATTTTTATCGTCTCCTG
LOC_Os11g08640
OsAffx.30890.1.S1_at--823--491Chr11:4596068..4596092 (25 bp)
ATCGTCTCCTGGCTCGTTATAACGG
LOC_Os11g08640
OsAffx.30890.1.S1_at--157--10351Chr11:4596084..4596108 (25 bp)
TTATAACGGCGACCCAGTTCCTTGT
LOC_Os11g08640
OsAffx.30890.1.S1_at--963--8451Chr11:4596111..4596135 (25 bp)
TGGCCGGCTTGTACATCGAGGGAAT
LOC_Os11g08640
OsAffx.30890.1.S1_at--931--7591NONE
GGGAATGCCACCTGTAATCGAAGAC
NONE
OsAffx.30890.1.S1_at--812--951Chr11:4596774..4596798 (25 bp)
AGGACACAATCCTCTGGTGGTGGTT
LOC_Os11g08640
OsAffx.30890.1.S1_at--560--2991Chr11:4596853..4596877 (25 bp)
AATGTTTTCGGATTCTGCTGAGCTT
LOC_Os11g08640
Target Sequence 
TTTGCTGTGATGGTTTCGGCGATACCCTTGACCGAGCTCTTCTACATACATGCCATGCGCATCGAGGAGATCACGGAGGA
CGACGACGACGCCAGTTACGAAGAAGCATCTTATAAACACAAGCAAAAGATGGGCAGGTGCATTCTCCGGGGACTTTTGG
TCTTGGCGTGGCTGTTTGTGATCGATTTTGGGAGAAGGGTTTGGGGAGAAGTTGATGAATTGCTACCTGCAATTTTTATC
GTCTCCTGGCTCGTTATAACGGCGACCCAGTTCCTTGTCATGGCCGGCTTGTACATCGAGGGAATGCCACCTGTAATCGA
AGACATCCGCGGAGGGGTGACAATACAGCTGCTTCAGGAATATATATGCGTATGGGAAGTGCTCCACAACGCAGGAGAGG
TGATCCATGAAGGGGCTGAGGACACAATCCTCTGGTGGTGGTTGGCCAGTGGCTTGTATACGGCAAAATCAGCATATGTC
ATGCAGTTCATGGGCAAAATGTTTTCGGATTCTGCTGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis