Browse Element(s) Details

OsAffx.7914.1.S1_at

Description

gb:NM_197717.1
DB_XREF= gi:37536793
TID=OsAffx.7914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0010C11.17), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g40890	11/11	retrotransposon protein, putative, unclassified
LOC_Os11g08610	1/11	retrotransposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g40820	Os.46624.1.S1_at	11/11	10	+	21620006..21623342	expressed protein
LOC_Os10g40830	Os.46623.1.S1_at	11/11	10	+	21625716..21627134	Matrixin family protein, expressed
LOC_Os10g40840	OsAffx.21375.2.S1_x_at	11/11	10	+	21629723..21631960	retrotransposon protein, putative, LINE subclass
LOC_Os10g40840	OsAffx.21375.2.S1_at	11/11	10	+	21629723..21631960	retrotransposon protein, putative, LINE subclass
LOC_Os10g40840	OsAffx.23250.2.S1_x_at	1/11	10	+	21629723..21631960	retrotransposon protein, putative, LINE subclass
LOC_Os10g40840	OsAffx.23143.3.S1_x_at	1/11	10	+	21629723..21631960	retrotransposon protein, putative, LINE subclass
LOC_Os10g40859	OsAffx.30740.1.S1_at	11/11	10	+	21632714..21638513	Matrixin family protein, expressed
LOC_Os10g40859	OsAffx.20138.1.S1_at	11/11	10	+	21632714..21638513	Matrixin family protein, expressed
LOC_Os10g40859	OsAffx.20140.1.S1_at	11/11	10	+	21632714..21638513	Matrixin family protein, expressed
LOC_Os10g40880	OsAffx.30741.1.S1_at	11/11	10	+	21639238..21640814	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890	OsAffx.7914.1.S1_at	11/11	10	+	21642155..21647340	retrotransposon protein, putative, unclassified
LOC_Os10g40900	OsAffx.20137.1.S1_at	11/11	10	+	21649422..21652233	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900	Os.13877.1.S1_at	1/11	10	+	21649422..21652233	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40920	OsAffx.6932.1.S1_at	11/11	10	+	21654252..21657630	pentatricopeptide, putative, expressed
LOC_Os10g40934	Os.28435.4.S1_x_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.1.S1_a_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.5.S1_x_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.4.S1_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.5.S1_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.23290.2.S1_x_at	2/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40950	Os.46622.1.S1_x_at	11/11	10	+	21664458..21665479	Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40950	OsAffx.26978.1.S1_at	1/11	10	+	21664458..21665479	Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40960	Os.23290.2.S1_s_at	11/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.23290.2.S1_x_at	10/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.23290.1.S1_at	10/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.28435.5.S1_at	1/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.28435.5.S1_x_at	1/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.7914.1.S1_at--982--1009	1	Chr10:21646767..21646791 (25 bp)	TATGGCCATCATTACTGACCGAGAT	LOC_Os10g40890
OsAffx.7914.1.S1_at--720--1019	1	Chr10:21646796..21646820 (25 bp)	TATTCACCAGTCAATTGTTTCAGGA	LOC_Os10g40890
OsAffx.7914.1.S1_at--105--531	1	Chr10:21646836..21646860 (25 bp)	GAAGGTCCAGCTGAGGTTTAGTACT	LOC_Os10g40890
OsAffx.7914.1.S1_at--137--683	1	Chr10:21646851..21646875 (25 bp)	GTTTAGTACTGCATATCACCCTCAG	LOC_Os10g40890
OsAffx.7914.1.S1_at--1120--83	1	Chr10:21646930..21646954 (25 bp)	ATGGCATTTCAGGAACCACATCAAT	LOC_Os10g40890
OsAffx.7914.1.S1_at--259--83	1	Chr10:21646953..21646977 (25 bp)	ATGGTATTCGTGGTTGGCCTTAGCA	LOC_Os10g40890
OsAffx.7914.1.S1_at--199--985	1	Chr10:21646992..21647016 (25 bp)	TACAACCTACCATACATCTTTACAG	LOC_Os10g40890
OsAffx.7914.1.S1_at--357--129	2	Chr10:21647015..21647039 (25 bp)	AGATGACACCATTCCAAGCTATGTA	LOC_Os10g40890
OsAffx.7914.1.S1_at--978--113	1	Chr10:21647073..21647097 (25 bp)	AGTGCCTTGTAATGTTTCTGCTGAA	LOC_Os10g40890
OsAffx.7914.1.S1_at--988--1059	1	Chr10:21647088..21647112 (25 bp)	TTCTGCTGAAGCTAGGGTCACTACT	LOC_Os10g40890
OsAffx.7914.1.S1_at--702--429	1	Chr10:21647264..21647288 (25 bp)	CCTTCGGCATTAGAGGCTCCTTGAA	LOC_Os10g40890

Target Sequence

TATGGCCATCATTACTGACCGAGATAGAATATTCACCAGTCAATTGTTTCAGGAAGTGTTTAAAGCAATGAAGGTCCAGC
TGAGGTTTAGTACTGCATATCACCCTCAGACAGATGGTCAAACTGAACGGGTTAACCAATGTCTTGAATCGTATCTAAGG
AGTATGGCATTTCAGGAACCACATCAATGGTATTCGTGGTTGGCCTTAGCAGAGTGGTGGTATAATACAACCTACCATAC
ATCTTTACAGATGACACCATTCCAAGCTATGTATGGGTATCCACCACCCCAAATTAATGAATTTTCAGTGCCTTGTAATG
TTTCTGCTGAAGCTAGGGTCACTACTGAGCAAAAGGAAGCAATATTGCGAAAACTCAAGTCAAGCTTAACTGAAGCACAG
AGGAGAATGAAGCATTATGCAGACAGAAATAGGTCTGAAAGGAGTTTGGCTGTGGGTGATATGGTTTATATTAAGCTACA
GCCTTACAGGCAAACTGCCTTCGGCATTAGAGGCTCCTTGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis