Browse Element(s) Details


OsAffx.30741.1.S1_at

Description tigr:9638.m03714
TID=OsAffx.30741.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative dioxygenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4088011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40810OsAffx.6930.1.S1_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40810Os.46625.1.S1_x_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40820Os.46624.1.S1_at11/1110+21620006..21623342expressed protein
LOC_Os10g40830Os.46623.1.S1_at11/1110+21625716..21627134Matrixin family protein, expressed
LOC_Os10g40840OsAffx.21375.2.S1_x_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.21375.2.S1_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23250.2.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23143.3.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40859OsAffx.30740.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20138.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20140.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40880OsAffx.30741.1.S1_at11/1110+21639238..21640814oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890OsAffx.7914.1.S1_at11/1110+21642155..21647340retrotransposon protein, putative, unclassified
LOC_Os10g40900OsAffx.20137.1.S1_at11/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900Os.13877.1.S1_at1/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40920OsAffx.6932.1.S1_at11/1110+21654252..21657630pentatricopeptide, putative, expressed
LOC_Os10g40934Os.28435.4.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.1.S1_a_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.4.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.23290.2.S1_x_at2/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40950Os.46622.1.S1_x_at11/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40950OsAffx.26978.1.S1_at1/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30741.1.S1_at--308--9171Chr10:21640147..21640168 (22 bp)
TGCCCATCCTTCATCTTTCAGGAAT
LOC_Os10g40880
OsAffx.30741.1.S1_at--50--6011Chr10:21639916..21639940 (25 bp)
GAGAGGTACTCCTTGGAGACGGCAA
LOC_Os10g40880
OsAffx.30741.1.S1_at--186--2331Chr10:21639892..21639916 (25 bp)
AAAGTAGCACGCTGCCTGTTGGAGT
LOC_Os10g40880
OsAffx.30741.1.S1_at--740--2111Chr10:21639855..21639879 (25 bp)
ACATGGGCGTTGATCCGGAGTCTCT
LOC_Os10g40880
OsAffx.30741.1.S1_at--965--531Chr10:21639843..21639867 (25 bp)
ATCCGGAGTCTCTCCTGGAGGTATT
LOC_Os10g40880
OsAffx.30741.1.S1_at--802--8011Chr10:21639827..21639851 (25 bp)
GGAGGTATTCAGAGGCCAGCCCCAG
LOC_Os10g40880
OsAffx.30741.1.S1_at--83--791Chr10:21639705..21639729 (25 bp)
ATGTGAACGACATGCAGGGCCTCCA
LOC_Os10g40880
OsAffx.30741.1.S1_at--1076--7331Chr10:21639414..21639438 (25 bp)
GTGCACCCGGAGAAGGAGCGCATCT
LOC_Os10g40880
OsAffx.30741.1.S1_at--1103--4471Chr10:21639310..21639334 (25 bp)
GCCGGTGTACAAGTCGATGGCCTAC
LOC_Os10g40880
OsAffx.30741.1.S1_at--855--7211Chr10:21639298..21639322 (25 bp)
GTCGATGGCCTACGAGGATTTCATG
LOC_Os10g40880
OsAffx.30741.1.S1_at--1087--7931Chr10:21639283..21639307 (25 bp)
GGATTTCATGAAGCGCTTCTTCTCG
LOC_Os10g40880
Target Sequence 
TGCCCATCCTTCATCTTTCAGGAATTCCATGGAGAGGTACTCCTTGGAGACGGCAAAAGTAGCACGCTGCCTGTTGGAGT
TCTTGGCCATGGACATGGGCGTTGATCCGGAGTCTCTCCTGGAGGTATTCAGAGGCCAGCCCCAGAACATGAGGGTGAAC
TACTACCCGCCGTGCAGGCAAACCGGCAAGGTGCTCGGCCTGTCGCCGCACTGCGACGCGACCAGCCTGACGCTGCTGCT
CCATGTGAACGACATGCAGGGCCTCCAGATCAGGAAGGACGGCAAGTGGCTCACCATCGAAGCCCTCGACGGCGCGTTCG
TCGTCAACGTCGGCGACATGCTTGAGATTCTGAGCAATGGGAGGTACAGGAGCGTTGAGCACAGGGCCGTGGTGCACCCG
GAGAAGGAGCGCATCTCGGCGGCGGTGTTCCACCAGGCGTGCCGGGACGCGACGGTCGGGCCTCTGCCGGAGCTCGTGAC
GAAGGACGGTGGCAGGCCGGTGTACAAGTCGATGGCCTACGAGGATTTCATGAAGCGCTTCTTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis