Browse Element(s) Details


Os.46623.1.S1_at

Description gb:BM420032
DB_XREF= gi:18386834
DB_XREF=R022E06
CLONE=R022E06
TID=Os.46623.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative metalloproteinase (OSJNBa0010C11.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4083011/11Matrixin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40802NANA10+21601568..21602690NA
LOC_Os10g40804Os.2741.4.S1_x_at10/1110+21604687..21607349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40806NANA10+21609129..21610643hypothetical protein
LOC_Os10g40810OsAffx.6930.1.S1_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40810Os.46625.1.S1_x_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40820Os.46624.1.S1_at11/1110+21620006..21623342expressed protein
LOC_Os10g40830Os.46623.1.S1_at11/1110+21625716..21627134Matrixin family protein, expressed
LOC_Os10g40840OsAffx.21375.2.S1_x_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.21375.2.S1_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23250.2.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23143.3.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40859OsAffx.30740.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20138.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20140.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40880OsAffx.30741.1.S1_at11/1110+21639238..21640814oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890OsAffx.7914.1.S1_at11/1110+21642155..21647340retrotransposon protein, putative, unclassified
LOC_Os10g40900OsAffx.20137.1.S1_at11/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900Os.13877.1.S1_at1/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005578cellular_componentextracellular matrix (sensu Metazoa)
GO:0031225cellular_componentanchored to membrane
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46623.1.S1_at--120--4671Chr10:21626122..21626146 (25 bp)
GCGTGCAGGCGTTGTACGGCTCCAA
LOC_Os10g40830
Os.46623.1.S1_at--265--8751Chr10:21626110..21626134 (25 bp)
TGTACGGCTCCAACCCACAGTTCAG
LOC_Os10g40830
Os.46623.1.S1_at--333--3631Chr10:21626033..21626057 (25 bp)
CTTGCTGGATCAGCTAGGCTGCTTT
LOC_Os10g40830
Os.46623.1.S1_at--572--911Chr10:21626018..21626042 (25 bp)
AGGCTGCTTTGTACAGTCTTGGTCA
LOC_Os10g40830
Os.46623.1.S1_at--1000--7131Chr10:21626003..21626027 (25 bp)
GTCTTGGTCATACTTGTGACGCAAT
LOC_Os10g40830
Os.46623.1.S1_at--212--9131Chr10:21625907..21625931 (25 bp)
TGCTGTGCAGCGTGATTCCATAGAA
LOC_Os10g40830
Os.46623.1.S1_at--17--5591Chr10:21625879..21625903 (25 bp)
GAAATGTCTCTTCTAGTGTGATAGC
LOC_Os10g40830
Os.46623.1.S1_at--276--6451Chr10:21625841..21625865 (25 bp)
GATAATTCAAAGAACTGCTTCTCAG
LOC_Os10g40830
Os.46623.1.S1_at--784--9071Chr10:21625826..21625850 (25 bp)
TGCTTCTCAGTTTCTCTTCTTACAA
LOC_Os10g40830
Os.46623.1.S1_at--26--5231Chr10:21625767..21625791 (25 bp)
GAATATCCTCCAGTTACTGTACATG
LOC_Os10g40830
Os.46623.1.S1_at--861--6771Chr10:21625755..21625779 (25 bp)
GTTACTGTACATGATCTACTGGTAT
LOC_Os10g40830
Target Sequence 
GCGTGCAGGCGTTGTACGGCTCCAACCCACAGTTCAGCCTCAGCTCGCTCTCCGAGCAGGGCACGTCCAGCTCGTCGCCG
CGGCGCTTGCTTGCTGGATCAGCTAGGCTGCTTTGTACAGTCTTGGTCATACTTGTGACGCAATTGTAGATGATNNANAN
GTTTTTATAGGCAACNAAAAGATTTGATTGGATTAGAAAGNAAAAANNAAGTGTTATGCTGTGCAGCGTGATTCCATAGA
AGAGGAAATGTCTCTTCTAGTGTGATAGCACAATTGGGTGTAGATAATTCAAAGAACTGCTTCTCAGTTTCTCTTCTTAC
AATATATATAGNCCTTTTANCAGTCAAATTAANNACNGAATATCCTCCAGTTACTGTACATGATCTACTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis