Browse Element(s) Details


OsAffx.20137.1.S1_at

Description tigr:9638.m03716
TID=OsAffx.20137.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative dioxygenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4090011/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40830Os.46623.1.S1_at11/1110+21625716..21627134Matrixin family protein, expressed
LOC_Os10g40840OsAffx.21375.2.S1_x_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.21375.2.S1_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23250.2.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23143.3.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40859OsAffx.30740.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20138.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20140.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40880OsAffx.30741.1.S1_at11/1110+21639238..21640814oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890OsAffx.7914.1.S1_at11/1110+21642155..21647340retrotransposon protein, putative, unclassified
LOC_Os10g40900OsAffx.20137.1.S1_at11/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900Os.13877.1.S1_at1/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40920OsAffx.6932.1.S1_at11/1110+21654252..21657630pentatricopeptide, putative, expressed
LOC_Os10g40934Os.28435.4.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.1.S1_a_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.4.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.23290.2.S1_x_at2/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40950Os.46622.1.S1_x_at11/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40950OsAffx.26978.1.S1_at1/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40960Os.23290.2.S1_s_at11/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.23290.2.S1_x_at10/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.23290.1.S1_at10/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.28435.5.S1_at1/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.28435.5.S1_x_at1/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20137.1.S1_at--321--4031Chr10:21650454..21650478 (25 bp)
CGATAGATCGGTACTCGTCGGAGAC
LOC_Os10g40900
OsAffx.20137.1.S1_at--947--6351Chr10:21650415..21650439 (25 bp)
GATGCCTGTTGGAGTTCATGGCGAA
LOC_Os10g40900
OsAffx.20137.1.S1_at--631--8531Chr10:21650361..21650385 (25 bp)
TGGAGAGGTTCCAGGACCAGCCGCA
LOC_Os10g40900
OsAffx.20137.1.S1_at--453--971Chr10:21650349..21650373 (25 bp)
AGGACCAGCCGCAGGGCATCAGGAT
LOC_Os10g40900
OsAffx.20137.1.S1_at--446--9091Chr10:21650247..21650271 (25 bp)
TGCTCCTGCAGGTGAACGACGTGCC
LOC_Os10g40900
OsAffx.20137.1.S1_at--301--2591Chr10:21650150..21650170 (21 bp)
AACGTCGGCGACATACTCGAGATCA
LOC_Os10g40900
OsAffx.20137.1.S1_at--714--1271Chr10:21649669..21649693 (25 bp)
AGATCATGAGCAACGGCAAGTACCG
LOC_Os10g40900
OsAffx.20137.1.S1_at--170--6471Chr10:21649520..21649544 (25 bp)
GATAACGCGCGGTACACGTCGATGG
LOC_Os10g40900
OsAffx.20137.1.S1_at--917--1891Chr10:21649505..21649529 (25 bp)
ACGTCGATGGGCTACCTGGATTTCA
LOC_Os10g40900
OsAffx.20137.1.S1_at--558--671Chr10:21649481..21649505 (25 bp)
ATGAAGCGTTACTACTCGGCAAAGC
LOC_Os10g40900
OsAffx.20137.1.S1_at--763--1911Chr10:21649453..21649477 (25 bp)
ACGGAAGGAATCACCTCGACGGCTT
LOC_Os10g40900
Target Sequence 
CGATAGATCGGTACTCGTCGGAGACGGCGAGGGTGGCGAGATGCCTGTTGGAGTTCATGGCGAAGGACATGGGCGTGAGG
CCGGGGTCGCTGCTGGAGAGGTTCCAGGACCAGCCGCAGGGCATCAGGATGAACGACTACCCGCCGTGCCGGGAGGCCGG
CAAGGTGGTCGGCCTGTCGCCGCACACCGACGCCGCCTGCCTGACGCTGCTCCTGCAGGTGAACGACGTGCCGGGCCTGC
AGATCAGGAGCCCCGGCGGCAGGTGGCTCGCCGTCGGCGCCCCTCCGGACGACGGCGCGTTCATCGTCAACGTCGGCGAC
ATACTCGAGATCATGAGCAACGGCAAGTACCGGAGCGTGGAGCACAGGGCGGTGGTGCGGCCGGACAGGGAGCGCGTGTC
GGCGGCGGTGTTCCACCAGCCGTGCCAGGACGCGGTGGTCGGGCCTCTGCCGGAGCTGGTCGGGGAAGGCGGCGGCGATA
ACGCGCGGTACACGTCGATGGGCTACCTGGATTTCATGAAGCGTTACTACTCGGCAAAGCTCGACGGAAGGAATCACCTC
GACGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis