Browse Element(s) Details


OsAffx.20140.1.S1_at

Description tigr:9638.m03711
TID=OsAffx.20140.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative metalloproteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4085911/11Matrixin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40806NANA10+21609129..21610643hypothetical protein
LOC_Os10g40810OsAffx.6930.1.S1_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40810Os.46625.1.S1_x_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40820Os.46624.1.S1_at11/1110+21620006..21623342expressed protein
LOC_Os10g40830Os.46623.1.S1_at11/1110+21625716..21627134Matrixin family protein, expressed
LOC_Os10g40840OsAffx.21375.2.S1_x_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.21375.2.S1_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23250.2.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23143.3.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40859OsAffx.30740.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20138.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20140.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40880OsAffx.30741.1.S1_at11/1110+21639238..21640814oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890OsAffx.7914.1.S1_at11/1110+21642155..21647340retrotransposon protein, putative, unclassified
LOC_Os10g40900OsAffx.20137.1.S1_at11/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900Os.13877.1.S1_at1/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40920OsAffx.6932.1.S1_at11/1110+21654252..21657630pentatricopeptide, putative, expressed
LOC_Os10g40934Os.28435.4.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.1.S1_a_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_x_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.4.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.28435.5.S1_at11/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934Os.23290.2.S1_x_at2/1110+21658835..21664003oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005578cellular_componentextracellular matrix (sensu Metazoa)
GO:0031225cellular_componentanchored to membrane
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20140.1.S1_at--942--7291Chr10:21633164..21633188 (25 bp)
GTGCGGCTGCGTCTGCAAGGGCGGC
LOC_Os10g40859
OsAffx.20140.1.S1_at--1024--951Chr10:21633105..21633129 (25 bp)
AGGACGGGCGGATACACCTGCACGC
LOC_Os10g40859
OsAffx.20140.1.S1_at--413--1591Chr10:21632950..21632974 (25 bp)
AGCTCGATGATGTACAGGCATTACA
LOC_Os10g40859
OsAffx.20140.1.S1_at--40--4351Chr10:21632885..21632909 (25 bp)
CCAGGAGCTGTACGGTGCCAAACCA
LOC_Os10g40859
OsAffx.20140.1.S1_at--1084--2351Chr10:21632866..21632890 (25 bp)
AAACCACCACGTGTCGACTTGACAG
LOC_Os10g40859
OsAffx.20140.1.S1_at--50--8711Chr10:21632855..21632879 (25 bp)
TGTCGACTTGACAGCCGACTCCAAG
LOC_Os10g40859
OsAffx.20140.1.S1_at--561--1651Chr10:21632832..21632856 (25 bp)
AGCCCAAGCGCGTCGAAACTATAAG
LOC_Os10g40859
OsAffx.20140.1.S1_at--321--4111Chr10:21632825..21632849 (25 bp)
GCGCGTCGAAACTATAAGGGAAATT
LOC_Os10g40859
OsAffx.20140.1.S1_at--167--5611Chr10:21632806..21632830 (25 bp)
GAAATTGAACAGCACATCCAGCAGA
LOC_Os10g40859
OsAffx.20140.1.S1_at--949--5491Chr10:21632800..21632824 (25 bp)
GAACAGCACATCCAGCAGAAAAAGG
LOC_Os10g40859
OsAffx.20140.1.S1_at--593--10871Chr10:21632750..21632774 (25 bp)
TTGGCGACTCGTACGTCTACCACTC
LOC_Os10g40859
Target Sequence 
GTGCGGCTGCGTCTGCAAGGGCGGCGGCGAGGAGGCGCTCGCCCACGCGCACCCGCCGCAGGACGGGCGGATACACCTGC
ACGCGGCGCGGAAGTGGGCGGTGACGAACGTGGCCGGCGCCGGCGGGGACGCGCCGCCGCTCGCCGTCGACCTGGAGTCG
GTGGCGGTGCACGAGATCGGCCACGCGCTCGGGCTCGGCCACTCGTCGTCGGAGAGCTCGATGATGTACAGGCATTACAG
GGGGAAGGTGAGCCTCACCGACGACGACGTCAAGGGCGTCCAGGAGCTGTACGGTGCCAAACCACCACGTGTCGACTTGA
CAGCCGACTCCAAGCCCAAGCGCGTCGAAACTATAAGGGAAATTGAACAGCACATCCAGCAGAAAAAGGAAACAGCAAAG
AAAAAACCCTTTTTTTGGCGACTCGTACGTCTACCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis