Browse Element(s) Details


Os.46624.1.S1_at

Description gb:NM_197710.1
DB_XREF= gi:37536779
TID=Os.46624.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46624 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0010C11.6), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4082011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40802NANA10+21601568..21602690NA
LOC_Os10g40804Os.2741.4.S1_x_at10/1110+21604687..21607349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40806NANA10+21609129..21610643hypothetical protein
LOC_Os10g40810OsAffx.6930.1.S1_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40810Os.46625.1.S1_x_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40820Os.46624.1.S1_at11/1110+21620006..21623342expressed protein
LOC_Os10g40830Os.46623.1.S1_at11/1110+21625716..21627134Matrixin family protein, expressed
LOC_Os10g40840OsAffx.21375.2.S1_x_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.21375.2.S1_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23250.2.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23143.3.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40859OsAffx.30740.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20138.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20140.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40880OsAffx.30741.1.S1_at11/1110+21639238..21640814oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890OsAffx.7914.1.S1_at11/1110+21642155..21647340retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46624.1.S1_at--1032--5251Chr10:21623125..21623149 (25 bp)
GAATCCATCCCCATCGATCAAAAAT
LOC_Os10g40820
Os.46624.1.S1_at--536--6451Chr10:21623110..21623134 (25 bp)
GATCAAAAATCCAAACCTCGGAGGG
LOC_Os10g40820
Os.46624.1.S1_at--897--8011Chr10:21622993..21623017 (25 bp)
GGAGGATCAACTCGCACTCGAATTT
LOC_Os10g40820
Os.46624.1.S1_at--526--1671Chr10:21622966..21622990 (25 bp)
AGCCGTCCGATCTCTTCGAGATTAG
LOC_Os10g40820
Os.46624.1.S1_at--413--4071Chr10:21622950..21622974 (25 bp)
CGAGATTAGTGCTTCTTTTATCAAG
LOC_Os10g40820
Os.46624.1.S1_at--980--10151Chr10:21622932..21622956 (25 bp)
TATCAAGCTATTTCGGTTTGGATCC
LOC_Os10g40820
Os.46624.1.S1_at--81--10871Chr10:21622915..21622939 (25 bp)
TTGGATCCGGTTTGTTCCACCCTTG
LOC_Os10g40820
Os.46624.1.S1_at--667--611Chr10:21622876..21622900 (25 bp)
ATGCTGTCGAATGTCGATGGCGAGT
LOC_Os10g40820
Os.46624.1.S1_at--657--1332Chr11:14747357..14747381 (25 bp)
AGAGGATTCTTCTCTCGTGCAGCAA
NONE
Os.46624.1.S1_at--359--7011Chr10:21622753..21622777 (25 bp)
GTACTCCGCTGACTCGACAAGGCAT
LOC_Os10g40820
Os.46624.1.S1_at--86--1491Chr10:21622717..21622741 (25 bp)
AGCAATCTTCAGGTGATGGGAGGTT
LOC_Os10g40820
Target Sequence 
GAATCCATCCCCATCGATCAAAAATCCAAACCTCGGAGGGGGACAGCAGTNGCGCGGATCTGGAGTGGCACGGCCGCCAC
CTTGCCACAATCGCGCCANCCNGGGCGAAGGAGGGGAAGGAGTCGAGAGGGAGGAGGATCAACTCGCACTCGAATTTCCA
GCCGTCCGATCTCTTCGAGATTAGTGCTTCTTTTATCAAGCTATTTCGGTTTGGATCCGGTTTGTTCCACCCTTGTTCGA
CGGTGGGTGATGCTGTCGAATGTCGATGGCGAGTGGCGACGATGGGAGGAGGCAACTCNGCCGATTTCTTCTCGGCGACG
GCCTCGCTCGTCTTCTCCAGAGGATTCTTCTCTCGTGCAGCAACGCCACTCCGTACTCCGCTGACTCGACAAGGCATCCC
GGCGATGAAGCAATCTTCAGGTGATGGGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis