Browse Element(s) Details


Os.51060.1.S1_at

Description gb:AK060444.1
DB_XREF= gi:32970462
TID=Os.51060.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-E10, full insert sequence.
FL= gb:AK101281.1 gb:AK060444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0866011/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08640OsAffx.30890.1.S1_at10/1111+4593412..4596946hypothetical protein
LOC_Os11g08640Os.7070.1.S1_at1/1111+4593412..4596946hypothetical protein
LOC_Os11g08650NANA11+4607926..4608477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08660Os.51060.2.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08660Os.51060.1.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08670Os.17282.1.S1_at10/1111+4621013..4627105ATP-NAD kinase family protein, expressed
LOC_Os11g08680Os.8169.1.S1_at3/1111+4629965..4630519hypothetical protein
LOC_Os11g08689OsAffx.30486.1.S1_at1/1111+4633832..4635452NA
LOC_Os11g08698OsAffx.18753.1.S1_at11/1111+4636454..4638950hypothetical protein
LOC_Os11g08698OsAffx.19202.1.S1_at1/1111+4636454..4638950hypothetical protein
LOC_Os11g08707Os.9658.1.S1_at11/1111+4639444..4640585expressed protein
LOC_Os11g08707OsAffx.18753.3.S1_x_at1/1111+4639444..4640585expressed protein
LOC_Os11g08720OsAffx.7657.1.S1_x_at1/1111+4642248..4643306hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_at3/1111+4644252..4645409hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_x_at1/1111+4644252..4645409hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006974biological_processresponse to DNA damage stimulus
GO:0007131biological_processmeiotic recombination
GO:0007140biological_processmale meiosis
GO:0007143biological_processfemale meiosis
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51060.1.S1_at--275--10171Chr11:4618710..4618734 (25 bp)
TATCATGAAATCTACCTGTCCAGCC
LOC_Os11g08660
Os.51060.1.S1_at--960--3371Chr11:4618730..4618754 (25 bp)
CAGCCTTGTTGGTATTTTTCAGCAA
LOC_Os11g08660
Os.51060.1.S1_at--653--8011Chr11:4618790..4618814 (25 bp)
GGAGGCTATTCCAAGGCAGAGAACA
LOC_Os11g08660
Os.51060.1.S1_at--501--5291Chr11:4618820..4618844 (25 bp)
GAATGGTCACCAAGTTCAGAAGATT
LOC_Os11g08660
Os.51060.1.S1_at--633--2311Chr11:4618865..4618889 (25 bp)
AAAGTGCCTGTACCTCAACTTTGGC
LOC_Os11g08660
Os.51060.1.S1_at--687--8271Chr11:4618887..4618911 (25 bp)
GGCATCCAGTAAATCTAACCCAGCT
LOC_Os11g08660
Os.51060.1.S1_at--395--5131Chr11:4618955..4618979 (25 bp)
GCAAAGCTAATGGAGACGCTCTTTT
LOC_Os11g08660
Os.51060.1.S1_at--50--8331Chr11:4619000..4619024 (25 bp)
GGCTCTGGAGCGTGTAGCATGTCAA
LOC_Os11g08660
Os.51060.1.S1_at--160--8351Chr11:4619028..4619052 (25 bp)
GGCTGTACACTCTAGTATTTAGCAG
LOC_Os11g08660
Os.51060.1.S1_at--868--8431Chr11:4619099..4619123 (25 bp)
GGCCAAATTTTGTTCATCTCTCGTA
LOC_Os11g08660
Os.51060.1.S1_at--1042--2231Chr11:4619207..4619231 (25 bp)
ACAATTTGGCTGTTTTGCACAATTC
LOC_Os11g08660
Target Sequence 
TATCATGAAATCTACCTGTCCAGCCTTGTTGGTATTTTTCAGCAAGACAGCAAGAGTGCAAGACAGATGGAATATAATCT
GGAGGCTATTCCAAGGCAGAGAACATGTGCGAATGGTCACCAAGTTCAGAAGATTCTCATGGAATGTCACTGAGCAAAGT
GCCTGTACCTCAACTTTGGCATCCAGTAAATCTAACCCAGCTGTATATTACCAAGAACGTTTCTTGATTATTAGATCCGA
GGGTAGCAAAGCTAATGGAGACGCTCTTTTTTTTTTTGGTTGAGTACAGTGGCTCTGGAGCGTGTAGCATGTCAAAAAGG
CTGTACACTCTAGTATTTAGCAGCTCAGTTGGTGACTTGGTGTTATGGTTGGCTTATGAAAGCACCAGAGGCCAAATTTT
GTTCATCTCTCGTATGATGTACAGGGGCAGATNTGAAAGACGGAGAAGCAGGTTAGAGTCCAGAACTGAAGGGCCAAACT
TTGTCCTGTTTNGAATTACAATTTGGCTGTTTTGCACAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis