Browse Element(s) Details


OsAffx.30905.4.S1_at

Description tigr:9639.m00940
TID=OsAffx.30905.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0996010/11hypothetical protein
LOC_Os11g096901/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09919OsAffx.19542.3.S1_x_at7/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919Os.31535.1.A1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919OsAffx.28530.1.S1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09928NANA11+5312395..5312639NA
LOC_Os11g09940Os.18594.1.S1_at11/1111+5320235..5323128expressed protein
LOC_Os11g09940Os.18594.1.S2_at11/1111+5320235..5323128expressed protein
LOC_Os11g09950NANA11+5327559..5328579Transposable element protein, putative, Retrotrans_gag
LOC_Os11g09960OsAffx.30905.4.S1_at10/1111+5332325..5335972hypothetical protein
LOC_Os11g09960OsAffx.30905.2.S1_at3/1111+5332325..5335972hypothetical protein
LOC_Os11g09960Os.17219.2.S1_x_at2/1111+5332325..5335972hypothetical protein
LOC_Os11g09970OsAffx.30905.1.S1_at11/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.17219.2.S1_x_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.24499.1.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970OsAffx.30905.2.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09980OsAffx.26161.1.S1_at10/1111+5345729..5347368hypothetical protein
LOC_Os11g09990Os.22922.1.S1_at11/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g09990OsAffx.30913.1.S1_at1/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g10000Os.51881.1.S1_at10/1111+5358656..5360424mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30905.4.S1_at--180--1131Chr11:5334193..5334213 (21 bp)
AGTGCTTGAGTGGATGCCATCTGCA
LOC_Os11g09960
OsAffx.30905.4.S1_at--181--6131Chr11:5333789..5334206 (25 bp)
GAGTGGATGCCATCTGCACTATCTT
LOC_Os11g09960
OsAffx.30905.4.S1_at--695--591Chr11:5333783..5334200 (25 bp)
ATGCCATCTGCACTATCTTGCATTC
LOC_Os11g09960
OsAffx.30905.4.S1_at--46--4391Chr11:5333155..5333176 (22 bp)
CCAAGTTGTATATTTGTGAGAGTCG
LOC_Os11g09960
OsAffx.30905.4.S1_at--361--7391Chr11:5333140..5333164 (25 bp)
GTGAGAGTCGATATTGCCATCTTAT
LOC_Os11g09960
OsAffx.30905.4.S1_at--276--7211Chr11:5333134..5333158 (25 bp)
GTCGATATTGCCATCTTATAGCTCG
LOC_Os11g09960
OsAffx.30905.4.S1_at--15--10231Chr11:5333129..5333153 (25 bp)
TATTGCCATCTTATAGCTCGCATGC
LOC_Os11g09960
OsAffx.30905.4.S1_at--679--3552Chr11:5333123..5333147 (25 bp)
CATCTTATAGCTCGCATGCCATTTT
LOC_Os11g09960
OsAffx.30905.4.S1_at--700--9551Chr11:5333121..5333145 (25 bp)
TCTTATAGCTCGCATGCCATTTTCC
LOC_Os11g09960
OsAffx.30905.4.S1_at--659--4431Chr11:5333093..5333130 (25 bp)
GCCATTTTCCATGTACGCAATTTTT
LOC_Os11g09960
OsAffx.30905.4.S1_at--549--4331NONE
CCATGTACGCAATTTTTAGTTGTAA
NONE
Target Sequence 
AGTGCTTGAGTGGATGCCATCTGCACTATCTTGCATTCTTGAACATGCACTGGTTCTAGAGAATCTCATTCTTCAGATCT
ATTCCAAGTTGTATATTTGTGAGAGTCGATATTGCCATCTTATAGCTCGCATGCCATTTTCCATGTACGCAATTTTTAGT
TGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30905.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis