Browse Element(s) Details


OsAffx.30915.1.S1_x_at

Description tigr:9639.m00984
TID=OsAffx.30915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1043011/11aminotransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10400Os.52471.1.S1_at11/1111+5641128..5643884F-box domain containing protein, expressed
LOC_Os11g10410NANA11+5645202..5647405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10420OsAffx.7064.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.12740.1.S1_x_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S2_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_s_at10/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10430OsAffx.30915.1.S1_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10430OsAffx.30915.1.S1_x_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10434Os.53198.1.S1_at10/1111+5675569..5679503expressed protein
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10450NANA11+5689779..5691743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10460OsAffx.18781.1.S1_x_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10460Os.2427.1.S1_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30915.1.S1_x_at--180--4691Chr11:5668966..5668990 (25 bp)
GCGGTTCGTGGCGAAGCTACTGAAC
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--774--8451Chr11:5668958..5668982 (25 bp)
TGGCGAAGCTACTGAACGACCTGTT
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--812--8091Chr11:5668802..5668826 (25 bp)
GGACGAGGGTGAGCTTCGCCTACTA
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--1114--9711Chr11:5668649..5668673 (25 bp)
TCAAGCGCCAGCTCATGGCGCGCGA
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--718--3931Chr11:5668538..5668562 (25 bp)
CGGCGGGCAAGGTTGGCGGTGACGT
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--363--1891Chr11:5668517..5668541 (25 bp)
ACGTCAGCGCCGACAAGTTCGAGGG
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--204--4571Chr11:5668511..5668535 (25 bp)
GCGCCGACAAGTTCGAGGGCTACTT
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--536--10631Chr11:5668500..5668524 (25 bp)
TTCGAGGGCTACTTGGAGAGCGCGA
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--50--8151Chr11:5668453..5668477 (25 bp)
GGACACGTGGCAGGCGACTGTCACT
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--951--1911Chr11:5668449..5668473 (25 bp)
ACGTGGCAGGCGACTGTCACTGTGC
LOC_Os11g10430
OsAffx.30915.1.S1_x_at--273--5731Chr11:5668438..5668462 (25 bp)
GACTGTCACTGTGCCAGAGGGAATT
LOC_Os11g10430
Target Sequence 
GCGGTTCGTGGCGAAGCTACTGAACGACCTGTTCGGCGTGCAGGCGAGGGGCGGGTGCGCGTGCGCGGGGCCGTACGGGC
ACGCGCTGCTCGGCGTCGGCGACGAGCTCTCGCTCCGCATCCGCGCCGCCATCGTCAGGGGGTACCACGGCGTGAAGCCG
GGGTGGACGAGGGTGAGCTTCGCCTACTACCTCTCCGGCGACGAGCTCCGCTACGTCCTCGCCGCCATCGACTTCGTCGC
GGCGCACGGCCACCGCTTCCTCCCGCTCTACGCCTTCGACTGGGCCACCGGCGACTGGTCCTTCCGCCGCGCCGCGCTCA
AGCGCCAGCTCATGGCGCGCGAGCTGCTCCACTGCCACCTTGGCAGCAGCTCCGCCACCAGCAGCGACTCCGACGGCGGC
GAGTTCCAGACGGCGAGGAAGACAACGGCGGCGGGCAAGGTTGGCGGTGACGTCAGCGCCGACAAGTTCGAGGGCTACTT
GGAGAGCGCGAGGAGGATCGCGCGGTCGCTGCCGGACACGTGGCAGGCGACTGTCACTGTGCCAGAGGGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30915.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis